@cyanheads/pubmed-mcp-server
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Production-ready PubMed Model Context Protocol (MCP) server that empowers AI agents and research tools with comprehensive access to PubMed's article database. Enables advanced, automated LLM workflows for searching, retrieving, analyzing, and visualizing
68 lines • 3 kB
TypeScript
/**
* @fileoverview Logic for the pubmed_fetch_contents MCP tool.
* Handles EFetch queries for specific PMIDs and formats the results.
* This tool can fetch various details from PubMed including abstracts, full XML,
* MEDLINE text, and citation data.
* @module src/mcp-server/tools/pubmedFetchContents/logic
*/
import { z } from "zod";
import { RequestContext } from "../../../utils/index.js";
export declare const PubMedFetchContentsInputSchema: z.ZodEffects<z.ZodObject<{
pmids: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
queryKey: z.ZodOptional<z.ZodString>;
webEnv: z.ZodOptional<z.ZodString>;
retstart: z.ZodOptional<z.ZodNumber>;
retmax: z.ZodOptional<z.ZodNumber>;
detailLevel: z.ZodDefault<z.ZodOptional<z.ZodEnum<["abstract_plus", "full_xml", "medline_text", "citation_data"]>>>;
includeMeshTerms: z.ZodDefault<z.ZodOptional<z.ZodBoolean>>;
includeGrantInfo: z.ZodDefault<z.ZodOptional<z.ZodBoolean>>;
outputFormat: z.ZodDefault<z.ZodOptional<z.ZodEnum<["json", "raw_text"]>>>;
}, "strip", z.ZodTypeAny, {
detailLevel: "abstract_plus" | "full_xml" | "medline_text" | "citation_data";
includeMeshTerms: boolean;
includeGrantInfo: boolean;
outputFormat: "json" | "raw_text";
queryKey?: string | undefined;
webEnv?: string | undefined;
retmax?: number | undefined;
retstart?: number | undefined;
pmids?: string[] | undefined;
}, {
queryKey?: string | undefined;
webEnv?: string | undefined;
retmax?: number | undefined;
retstart?: number | undefined;
pmids?: string[] | undefined;
detailLevel?: "abstract_plus" | "full_xml" | "medline_text" | "citation_data" | undefined;
includeMeshTerms?: boolean | undefined;
includeGrantInfo?: boolean | undefined;
outputFormat?: "json" | "raw_text" | undefined;
}>, {
detailLevel: "abstract_plus" | "full_xml" | "medline_text" | "citation_data";
includeMeshTerms: boolean;
includeGrantInfo: boolean;
outputFormat: "json" | "raw_text";
queryKey?: string | undefined;
webEnv?: string | undefined;
retmax?: number | undefined;
retstart?: number | undefined;
pmids?: string[] | undefined;
}, {
queryKey?: string | undefined;
webEnv?: string | undefined;
retmax?: number | undefined;
retstart?: number | undefined;
pmids?: string[] | undefined;
detailLevel?: "abstract_plus" | "full_xml" | "medline_text" | "citation_data" | undefined;
includeMeshTerms?: boolean | undefined;
includeGrantInfo?: boolean | undefined;
outputFormat?: "json" | "raw_text" | undefined;
}>;
export type PubMedFetchContentsInput = z.infer<typeof PubMedFetchContentsInputSchema>;
export type PubMedFetchContentsOutput = {
content: string;
articlesReturned: number;
eFetchUrl: string;
};
export declare function pubMedFetchContentsLogic(input: PubMedFetchContentsInput, parentRequestContext: RequestContext): Promise<PubMedFetchContentsOutput>;
//# sourceMappingURL=logic.d.ts.map