@cleerlycode/cornerstone-wado-image-loader/src/imageLoader/wadouri/getUncompressedImageFrame.js

Cornerstone ImageLoader for DICOM WADO-URI

import unpackBinaryFrame from './unpackBinaryFrame.js';

/**
 * Function to deal with extracting an image frame from an encapsulated data set.
 */

function getUncompressedImageFrame (dataSet, frameIndex) {
  const pixelDataElement = dataSet.elements.x7fe00010 || dataSet.elements.x7fe00008;
  const bitsAllocated = dataSet.uint16('x00280100');
  const rows = dataSet.uint16('x00280010');
  const columns = dataSet.uint16('x00280011');
  const samplesPerPixel = dataSet.uint16('x00280002');

  const pixelDataOffset = pixelDataElement.dataOffset;
  const pixelsPerFrame = rows * columns * samplesPerPixel;

  let frameOffset;

  if (bitsAllocated === 8) {
    frameOffset = pixelDataOffset + frameIndex * pixelsPerFrame;
    if (frameOffset >= dataSet.byteArray.length) {
      throw new Error('frame exceeds size of pixelData');
    }

    return new Uint8Array(dataSet.byteArray.buffer, frameOffset, pixelsPerFrame);
  } else if (bitsAllocated === 16) {
    frameOffset = pixelDataOffset + frameIndex * pixelsPerFrame * 2;
    if (frameOffset >= dataSet.byteArray.length) {
      throw new Error('frame exceeds size of pixelData');
    }

    return new Uint8Array(dataSet.byteArray.buffer, frameOffset, pixelsPerFrame * 2);
  } else if (bitsAllocated === 1) {
    frameOffset = pixelDataOffset + frameIndex * pixelsPerFrame * 0.125;
    if (frameOffset >= dataSet.byteArray.length) {
      throw new Error('frame exceeds size of pixelData');
    }

    return unpackBinaryFrame(dataSet.byteArray, frameOffset, pixelsPerFrame);
  } else if (bitsAllocated === 32) {
    frameOffset = pixelDataOffset + frameIndex * pixelsPerFrame * 4;
    if (frameOffset >= dataSet.byteArray.length) {
      throw new Error('frame exceeds size of pixelData');
    }

    return new Uint8Array(dataSet.byteArray.buffer, frameOffset, pixelsPerFrame * 4);
  }

  throw new Error('unsupported pixel format');
}

export default getUncompressedImageFrame;