@cleerlycode/cornerstone-wado-image-loader
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Cornerstone ImageLoader for DICOM WADO-URI
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<a href="../../../../index.html">all files</a> / <a href="index.html">src/webWorker/decodeTask/decoders/</a> decodeRLE.js
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<span class="cline-any cline-neutral"> </span></td><td class="text"><pre class="prettyprint lang-js">function decodeRLE (imageFrame, pixelData) {
<span class="missing-if-branch" title="if path not taken" >I</span>if (imageFrame.bitsAllocated === 8) {
<span class="cstat-no" title="statement not covered" > if (imageFrame.planarConfiguration) {</span>
<span class="cstat-no" title="statement not covered" > return decode8Planar(imageFrame, pixelData);</span>
}
<span class="cstat-no" title="statement not covered" > return decode8(imageFrame, pixelData);</span>
} else <span class="missing-if-branch" title="else path not taken" >E</span>if (imageFrame.bitsAllocated === 16) {
return decode16(imageFrame, pixelData);
}
<span class="cstat-no" title="statement not covered" > throw new Error('unsupported pixel format for RLE');</span>
}
function decode8 (imageFrame, pixelData) <span class="fstat-no" title="function not covered" >{</span>
const frameData = <span class="cstat-no" title="statement not covered" >pixelData;</span>
const frameSize = <span class="cstat-no" title="statement not covered" >imageFrame.rows * imageFrame.columns;</span>
const outFrame = <span class="cstat-no" title="statement not covered" >new ArrayBuffer(frameSize * imageFrame.samplesPerPixel);</span>
const header = <span class="cstat-no" title="statement not covered" >new DataView(frameData.buffer, frameData.byteOffset);</span>
const data = <span class="cstat-no" title="statement not covered" >new Int8Array(frameData.buffer, frameData.byteOffset);</span>
const out = <span class="cstat-no" title="statement not covered" >new Int8Array(outFrame);</span>
let outIndex = <span class="cstat-no" title="statement not covered" >0;</span>
const numSegments = <span class="cstat-no" title="statement not covered" >header.getInt32(0, true);</span>
<span class="cstat-no" title="statement not covered" > for (let s = 0; s < numSegments; ++s) {</span>
<span class="cstat-no" title="statement not covered" > outIndex = s;</span>
let inIndex = <span class="cstat-no" title="statement not covered" >header.getInt32((s + 1) * 4, true);</span>
let maxIndex = <span class="cstat-no" title="statement not covered" >header.getInt32((s + 2) * 4, true);</span>
<span class="cstat-no" title="statement not covered" > if (maxIndex === 0) {</span>
<span class="cstat-no" title="statement not covered" > maxIndex = frameData.length;</span>
}
const endOfSegment = <span class="cstat-no" title="statement not covered" >frameSize * numSegments;</span>
<span class="cstat-no" title="statement not covered" > while (inIndex < maxIndex) {</span>
const n = <span class="cstat-no" title="statement not covered" >data[inIndex++];</span>
<span class="cstat-no" title="statement not covered" > if (n >= 0 && n <= 127) {</span>
// copy n bytes
<span class="cstat-no" title="statement not covered" > for (let i = 0; i < n + 1 && outIndex < endOfSegment; ++i) {</span>
<span class="cstat-no" title="statement not covered" > out[outIndex] = data[inIndex++];</span>
<span class="cstat-no" title="statement not covered" > outIndex += imageFrame.samplesPerPixel;</span>
}
} else <span class="cstat-no" title="statement not covered" >if (n <= -1 && n >= -127) {</span>
const value = <span class="cstat-no" title="statement not covered" >data[inIndex++];</span>
// run of n bytes
<span class="cstat-no" title="statement not covered" > for (let j = 0; j < -n + 1 && outIndex < endOfSegment; ++j) {</span>
<span class="cstat-no" title="statement not covered" > out[outIndex] = value;</span>
<span class="cstat-no" title="statement not covered" > outIndex += imageFrame.samplesPerPixel;</span>
}
}/* else if (n === -128) {
} // do nothing */
}
}
<span class="cstat-no" title="statement not covered" > imageFrame.pixelData = new Uint8Array(outFrame);</span>
<span class="cstat-no" title="statement not covered" > return imageFrame;</span>
}
function decode8Planar (imageFrame, pixelData) <span class="fstat-no" title="function not covered" >{</span>
const frameData = <span class="cstat-no" title="statement not covered" >pixelData;</span>
const frameSize = <span class="cstat-no" title="statement not covered" >imageFrame.rows * imageFrame.columns;</span>
const outFrame = <span class="cstat-no" title="statement not covered" >new ArrayBuffer(frameSize * imageFrame.samplesPerPixel);</span>
const header = <span class="cstat-no" title="statement not covered" >new DataView(frameData.buffer, frameData.byteOffset);</span>
const data = <span class="cstat-no" title="statement not covered" >new Int8Array(frameData.buffer, frameData.byteOffset);</span>
const out = <span class="cstat-no" title="statement not covered" >new Int8Array(outFrame);</span>
let outIndex = <span class="cstat-no" title="statement not covered" >0;</span>
const numSegments = <span class="cstat-no" title="statement not covered" >header.getInt32(0, true);</span>
<span class="cstat-no" title="statement not covered" > for (let s = 0; s < numSegments; ++s) {</span>
<span class="cstat-no" title="statement not covered" > outIndex = s * frameSize;</span>
let inIndex = <span class="cstat-no" title="statement not covered" >header.getInt32((s + 1) * 4, true);</span>
let maxIndex = <span class="cstat-no" title="statement not covered" >header.getInt32((s + 2) * 4, true);</span>
<span class="cstat-no" title="statement not covered" > if (maxIndex === 0) {</span>
<span class="cstat-no" title="statement not covered" > maxIndex = frameData.length;</span>
}
const endOfSegment = <span class="cstat-no" title="statement not covered" >frameSize * numSegments;</span>
<span class="cstat-no" title="statement not covered" > while (inIndex < maxIndex) {</span>
const n = <span class="cstat-no" title="statement not covered" >data[inIndex++];</span>
<span class="cstat-no" title="statement not covered" > if (n >= 0 && n <= 127) {</span>
// copy n bytes
<span class="cstat-no" title="statement not covered" > for (let i = 0; i < n + 1 && outIndex < endOfSegment; ++i) {</span>
<span class="cstat-no" title="statement not covered" > out[outIndex] = data[inIndex++];</span>
<span class="cstat-no" title="statement not covered" > outIndex++;</span>
}
} else <span class="cstat-no" title="statement not covered" >if (n <= -1 && n >= -127) {</span>
const value = <span class="cstat-no" title="statement not covered" >data[inIndex++];</span>
// run of n bytes
<span class="cstat-no" title="statement not covered" > for (let j = 0; j < -n + 1 && outIndex < endOfSegment; ++j) {</span>
<span class="cstat-no" title="statement not covered" > out[outIndex] = value;</span>
<span class="cstat-no" title="statement not covered" > outIndex++;</span>
}
}/* else if (n === -128) {
} // do nothing */
}
}
<span class="cstat-no" title="statement not covered" > imageFrame.pixelData = new Uint8Array(outFrame);</span>
<span class="cstat-no" title="statement not covered" > return imageFrame;</span>
}
function decode16 (imageFrame, pixelData) {
const frameData = pixelData;
const frameSize = imageFrame.rows * imageFrame.columns;
const outFrame = new ArrayBuffer(frameSize * imageFrame.samplesPerPixel * 2);
const header = new DataView(frameData.buffer, frameData.byteOffset);
const data = new Int8Array(frameData.buffer, frameData.byteOffset);
const out = new Int8Array(outFrame);
const numSegments = header.getInt32(0, true);
for (let s = 0; s < numSegments; ++s) {
let outIndex = 0;
const highByte = (s === 0 ? 1 : 0);
let inIndex = header.getInt32((s + 1) * 4, true);
let maxIndex = header.getInt32((s + 2) * 4, true);
if (maxIndex === 0) {
maxIndex = frameData.length;
}
while (inIndex < maxIndex) {
const n = data[inIndex++];
if (n >= 0 && n <= 127) {
for (let i = 0; i < n + 1 && outIndex < frameSize; ++i) {
out[(outIndex * 2) + highByte] = data[inIndex++];
outIndex++;
}
} else <span class="missing-if-branch" title="else path not taken" >E</span>if (n <= -1 && n >= -127) {
const value = data[inIndex++];
for (let j = 0; j < -n + 1 && outIndex < frameSize; ++j) {
out[(outIndex * 2) + highByte] = value;
outIndex++;
}
}/* else if (n === -128) {
} // do nothing */
}
}
<span class="missing-if-branch" title="if path not taken" >I</span>if (imageFrame.pixelRepresentation === 0) {
<span class="cstat-no" title="statement not covered" > imageFrame.pixelData = new Uint16Array(outFrame);</span>
} else {
imageFrame.pixelData = new Int16Array(outFrame);
}
return imageFrame;
}
export default decodeRLE;
</pre></td></tr>
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