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Cornerstone ImageLoader for DICOM WADO-URI
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<a href="../../../../index.html">all files</a> / <a href="index.html">src/webWorker/decodeTask/decoders/</a> decodeJPEG2000.js
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<span class="strong">6.41% </span>
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<span class='fraction'>5/78</span>
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<span class="cline-any cline-neutral"> </span></td><td class="text"><pre class="prettyprint lang-js">function decodeJpx (imageFrame, pixelData) <span class="fstat-no" title="function not covered" >{</span>
const jpxImage = <span class="cstat-no" title="statement not covered" >new JpxImage();</span>
<span class="cstat-no" title="statement not covered" > jpxImage.parse(pixelData);</span>
const tileCount = <span class="cstat-no" title="statement not covered" >jpxImage.tiles.length;</span>
<span class="cstat-no" title="statement not covered" > if (tileCount !== 1) {</span>
<span class="cstat-no" title="statement not covered" > throw new Error(`JPEG2000 decoder returned a tileCount of ${tileCount}, when 1 is expected`);</span>
}
<span class="cstat-no" title="statement not covered" > imageFrame.columns = jpxImage.width;</span>
<span class="cstat-no" title="statement not covered" > imageFrame.rows = jpxImage.height;</span>
<span class="cstat-no" title="statement not covered" > imageFrame.pixelData = jpxImage.tiles[0].items;</span>
<span class="cstat-no" title="statement not covered" > return imageFrame;</span>
}
let openJPEG;
function decodeOpenJPEG (data, bytesPerPixel, signed) <span class="fstat-no" title="function not covered" >{</span>
const dataPtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(data.length);</span>
<span class="cstat-no" title="statement not covered" > openJPEG.writeArrayToMemory(data, dataPtr);</span>
// create param outpout
const imagePtrPtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(4);</span>
const imageSizePtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(4);</span>
const imageSizeXPtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(4);</span>
const imageSizeYPtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(4);</span>
const imageSizeCompPtr = <span class="cstat-no" title="statement not covered" >openJPEG._malloc(4);</span>
const t0 = <span class="cstat-no" title="statement not covered" >new Date().getTime();</span>
const ret = <span class="cstat-no" title="statement not covered" >openJPEG.ccall('jp2_decode', 'number', ['number', 'number', 'number', 'number', 'number', 'number', 'number'],</span>
[dataPtr, data.length, imagePtrPtr, imageSizePtr, imageSizeXPtr, imageSizeYPtr, imageSizeCompPtr]);
// add num vomp..etc
<span class="cstat-no" title="statement not covered" > if (ret !== 0) {</span>
<span class="cstat-no" title="statement not covered" > console.log('[opj_decode] decoding failed!');</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(dataPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(openJPEG.getValue(imagePtrPtr, '*'));</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeXPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeYPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizePtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeCompPtr);</span>
<span class="cstat-no" title="statement not covered" > return;</span>
}
const imagePtr = <span class="cstat-no" title="statement not covered" >openJPEG.getValue(imagePtrPtr, '*');</span>
const image = <span class="cstat-no" title="statement not covered" >{</span>
length: openJPEG.getValue(imageSizePtr, 'i32'),
sx: openJPEG.getValue(imageSizeXPtr, 'i32'),
sy: openJPEG.getValue(imageSizeYPtr, 'i32'),
nbChannels: openJPEG.getValue(imageSizeCompPtr, 'i32'), // hard coded for now
perf_timetodecode: undefined,
pixelData: undefined
};
// Copy the data from the EMSCRIPTEN heap into the correct type array
const length = <span class="cstat-no" title="statement not covered" >image.sx * image.sy * image.nbChannels;</span>
const src32 = <span class="cstat-no" title="statement not covered" >new Int32Array(openJPEG.HEAP32.buffer, imagePtr, length);</span>
<span class="cstat-no" title="statement not covered" > if (bytesPerPixel === 1) {</span>
<span class="cstat-no" title="statement not covered" > if (Uint8Array.from) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData = Uint8Array.from(src32);</span>
} else {
<span class="cstat-no" title="statement not covered" > image.pixelData = new Uint8Array(length);</span>
<span class="cstat-no" title="statement not covered" > for (let i = 0; i < length; i++) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData[i] = src32[i];</span>
}
}
} else <span class="cstat-no" title="statement not covered" >if (signed) {</span>
<span class="cstat-no" title="statement not covered" > if (Int16Array.from) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData = Int16Array.from(src32);</span>
} else {
<span class="cstat-no" title="statement not covered" > image.pixelData = new Int16Array(length);</span>
<span class="cstat-no" title="statement not covered" > for (let i = 0; i < length; i++) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData[i] = src32[i];</span>
}
}
} else <span class="cstat-no" title="statement not covered" >if (Uint16Array.from) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData = Uint16Array.from(src32);</span>
} else {
<span class="cstat-no" title="statement not covered" > image.pixelData = new Uint16Array(length);</span>
<span class="cstat-no" title="statement not covered" > for (let i = 0; i < length; i++) {</span>
<span class="cstat-no" title="statement not covered" > image.pixelData[i] = src32[i];</span>
}
}
const t1 = <span class="cstat-no" title="statement not covered" >new Date().getTime();</span>
<span class="cstat-no" title="statement not covered" > image.perf_timetodecode = t1 - t0;</span>
// free
<span class="cstat-no" title="statement not covered" > openJPEG._free(dataPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imagePtrPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imagePtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizePtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeXPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeYPtr);</span>
<span class="cstat-no" title="statement not covered" > openJPEG._free(imageSizeCompPtr);</span>
<span class="cstat-no" title="statement not covered" > return image;</span>
}
function decodeOpenJpeg2000 (imageFrame, pixelData) <span class="fstat-no" title="function not covered" >{</span>
const bytesPerPixel = <span class="cstat-no" title="statement not covered" >imageFrame.bitsAllocated <= 8 ? 1 : 2;</span>
const signed = <span class="cstat-no" title="statement not covered" >imageFrame.pixelRepresentation === 1;</span>
const image = <span class="cstat-no" title="statement not covered" >decodeOpenJPEG(pixelData, bytesPerPixel, signed);</span>
<span class="cstat-no" title="statement not covered" > imageFrame.columns = image.sx;</span>
<span class="cstat-no" title="statement not covered" > imageFrame.rows = image.sy;</span>
<span class="cstat-no" title="statement not covered" > imageFrame.pixelData = image.pixelData;</span>
<span class="cstat-no" title="statement not covered" > if (image.nbChannels > 1) {</span>
<span class="cstat-no" title="statement not covered" > imageFrame.photometricInterpretation = 'RGB';</span>
}
<span class="cstat-no" title="statement not covered" > return imageFrame;</span>
}
function initializeJPEG2000 (decodeConfig) {
// check to make sure codec is loaded
<span class="missing-if-branch" title="else path not taken" >E</span>if (!decodeConfig.usePDFJS) {
<span class="missing-if-branch" title="if path not taken" >I</span>if (typeof OpenJPEG === 'undefined') {
<span class="cstat-no" title="statement not covered" > throw new Error('OpenJPEG decoder not loaded');</span>
}
}
<span class="missing-if-branch" title="else path not taken" >E</span>if (!openJPEG) {
openJPEG = OpenJPEG();
<span class="missing-if-branch" title="if path not taken" >I</span>if (!openJPEG || !openJPEG._jp2_decode) {
<span class="cstat-no" title="statement not covered" > throw new Error('OpenJPEG failed to initialize');</span>
}
}
}
function decodeJPEG2000 (imageFrame, pixelData, decodeConfig, options = {}) <span class="fstat-no" title="function not covered" >{</span>
<span class="cstat-no" title="statement not covered" > initializeJPEG2000(decodeConfig);</span>
<span class="cstat-no" title="statement not covered" > if (options.usePDFJS || decodeConfig.usePDFJS) {</span>
// OHIF image-JPEG2000 https://github.com/OHIF/image-JPEG2000
// console.log('PDFJS')
<span class="cstat-no" title="statement not covered" > return decodeJpx(imageFrame, pixelData);</span>
}
// OpenJPEG2000 https://github.com/jpambrun/openjpeg
// console.log('OpenJPEG')
<span class="cstat-no" title="statement not covered" > return decodeOpenJpeg2000(imageFrame, pixelData);</span>
}
export default decodeJPEG2000;
export { initializeJPEG2000 };
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