@cleerlycode/cornerstone-wado-image-loader
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Cornerstone ImageLoader for DICOM WADO-URI
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<title>Code coverage report for src/imageLoader/wadors/metaData/metaDataProvider.js</title>
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<a href="../../../../index.html">all files</a> / <a href="index.html">src/imageLoader/wadors/metaData/</a> metaDataProvider.js
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<span class="cline-any cline-neutral"> </span></td><td class="text"><pre class="prettyprint lang-js">import { dicomParser } from '../../../externalModules.js';
import getNumberValues from './getNumberValues.js';
import getValue from './getValue.js';
import getNumberValue from './getNumberValue.js';
import metaDataManager from '../metaDataManager.js';
function metaDataProvider (type, imageId) {
const metaData = metaDataManager.get(imageId);
<span class="missing-if-branch" title="else path not taken" >E</span>if (!metaData) {
return;
}
<span class="cstat-no" title="statement not covered" > if (type === 'generalSeriesModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
modality: getValue(metaData['00080060']),
seriesInstanceUID: getValue(metaData['0020000e']),
seriesNumber: getNumberValue(metaData['00200011']),
studyInstanceUID: getValue(metaData['0020000d']),
seriesDate: dicomParser.parseDA(getValue(metaData['00080021'])),
seriesTime: dicomParser.parseTM(getValue(metaData['00080031'], 0, ''))
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'patientStudyModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
patientAge: getNumberValue(metaData['00101010']),
patientSize: getNumberValue(metaData['00101020']),
patientWeight: getNumberValue(metaData['00101030'])
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'imagePlaneModule') {</span>
const imageOrientationPatient = <span class="cstat-no" title="statement not covered" >getNumberValues(metaData['00200037'], 6);</span>
const imagePositionPatient = <span class="cstat-no" title="statement not covered" >getNumberValues(metaData['00200032'], 3);</span>
const pixelSpacing = <span class="cstat-no" title="statement not covered" >getNumberValues(metaData['00280030'], 2);</span>
let columnPixelSpacing = <span class="cstat-no" title="statement not covered" >1.0;</span>
let rowPixelSpacing = <span class="cstat-no" title="statement not covered" >1.0;</span>
<span class="cstat-no" title="statement not covered" > if (pixelSpacing) {</span>
<span class="cstat-no" title="statement not covered" > rowPixelSpacing = pixelSpacing[0];</span>
<span class="cstat-no" title="statement not covered" > columnPixelSpacing = pixelSpacing[1];</span>
}
let rowCosines = <span class="cstat-no" title="statement not covered" >null;</span>
let columnCosines = <span class="cstat-no" title="statement not covered" >null;</span>
<span class="cstat-no" title="statement not covered" > if (imageOrientationPatient) {</span>
<span class="cstat-no" title="statement not covered" > rowCosines = [parseFloat(imageOrientationPatient[0]), parseFloat(imageOrientationPatient[1]), parseFloat(imageOrientationPatient[2])];</span>
<span class="cstat-no" title="statement not covered" > columnCosines = [parseFloat(imageOrientationPatient[3]), parseFloat(imageOrientationPatient[4]), parseFloat(imageOrientationPatient[5])];</span>
}
<span class="cstat-no" title="statement not covered" > return {</span>
frameOfReferenceUID: getValue(metaData['00200052']),
rows: getNumberValue(metaData['00280010']),
columns: getNumberValue(metaData['00280011']),
imageOrientationPatient,
rowCosines,
columnCosines,
imagePositionPatient,
sliceThickness: getNumberValue(metaData['00180050']),
sliceLocation: getNumberValue(metaData['00201041']),
pixelSpacing,
rowPixelSpacing,
columnPixelSpacing
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'imagePixelModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
samplesPerPixel: getNumberValue(metaData['00280002']),
photometricInterpretation: getValue(metaData['00280004']),
rows: getNumberValue(metaData['00280010']),
columns: getNumberValue(metaData['00280011']),
bitsAllocated: getNumberValue(metaData['00280100']),
bitsStored: getNumberValue(metaData['00280101']),
highBit: getValue(metaData['00280102']),
pixelRepresentation: getNumberValue(metaData['00280103']),
planarConfiguration: getNumberValue(metaData['00280006']),
pixelAspectRatio: getValue(metaData['00280034']),
smallestPixelValue: getNumberValue(metaData['00280106']),
largestPixelValue: getNumberValue(metaData['00280107']),
redPaletteColorLookupTableDescriptor: getNumberValues(metaData['00281101']),
greenPaletteColorLookupTableDescriptor: getNumberValues(metaData['00281102']),
bluePaletteColorLookupTableDescriptor: getNumberValues(metaData['00281103']),
redPaletteColorLookupTableData: getNumberValues(metaData['00281201']),
greenPaletteColorLookupTableData: getNumberValues(metaData['00281202']),
bluePaletteColorLookupTableData: getNumberValues(metaData['00281203'])
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'voiLutModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
// TODO VOT LUT Sequence
windowCenter: getNumberValues(metaData['00281050'], 1),
windowWidth: getNumberValues(metaData['00281051'], 1)
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'modalityLutModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
// TODO VOT LUT Sequence
rescaleIntercept: getNumberValue(metaData['00281052']),
rescaleSlope: getNumberValue(metaData['00281053']),
rescaleType: getValue(metaData['00281054'])
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'sopCommonModule') {</span>
<span class="cstat-no" title="statement not covered" > return {</span>
sopClassUID: getValue(metaData['00080016']),
sopInstanceUID: getValue(metaData['00080018'])
};
}
<span class="cstat-no" title="statement not covered" > if (type === 'petIsotopeModule') {</span>
const radiopharmaceuticalInfo = <span class="cstat-no" title="statement not covered" >getValue(metaData['00540016']);</span>
<span class="cstat-no" title="statement not covered" > if (radiopharmaceuticalInfo === undefined) {</span>
<span class="cstat-no" title="statement not covered" > return;</span>
}
<span class="cstat-no" title="statement not covered" > return {</span>
radiopharmaceuticalInfo: {
radiopharmaceuticalStartTime: dicomParser.parseTM(getValue(radiopharmaceuticalInfo['00181072'], 0, '')),
radionuclideTotalDose: getNumberValue(radiopharmaceuticalInfo['00181074']),
radionuclideHalfLife: getNumberValue(radiopharmaceuticalInfo['00181075'])
}
};
}
}
export default metaDataProvider;
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