3dmol
Version:
JavaScript/TypeScript molecular visualization library
72 lines (69 loc) • 33 kB
HTML
<html lang="en" style="font-size:16px"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1"><meta name="Author" content="David Koes & 3Dmoljs Contributors"><meta name="Description" content="A modern, object-oriented JavaScript library for visualizing molecular data"><title>Source: parsers/ParserOptionsSpec.ts</title><!--[if lt IE 9]>
<script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
<![endif]--><script src="scripts/third-party/hljs.js" defer="defer"></script><script src="scripts/third-party/hljs-line-num.js" defer="defer"></script><script src="scripts/third-party/popper.js" defer="defer"></script><script src="scripts/third-party/tippy.js" defer="defer"></script><script src="scripts/third-party/tocbot.min.js"></script><script>var baseURL="/",locationPathname="";baseURL=(locationPathname=document.location.pathname).substr(0,locationPathname.lastIndexOf("/")+1)</script><link rel="stylesheet" href="styles/clean-jsdoc-theme.min.css"><style>article ul li{list-style:disc}</style><svg aria-hidden="true" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" style="display:none"><defs><symbol id="copy-icon" viewbox="0 0 488.3 488.3"><g><path d="M314.25,85.4h-227c-21.3,0-38.6,17.3-38.6,38.6v325.7c0,21.3,17.3,38.6,38.6,38.6h227c21.3,0,38.6-17.3,38.6-38.6V124 C352.75,102.7,335.45,85.4,314.25,85.4z M325.75,449.6c0,6.4-5.2,11.6-11.6,11.6h-227c-6.4,0-11.6-5.2-11.6-11.6V124 c0-6.4,5.2-11.6,11.6-11.6h227c6.4,0,11.6,5.2,11.6,11.6V449.6z"/><path d="M401.05,0h-227c-21.3,0-38.6,17.3-38.6,38.6c0,7.5,6,13.5,13.5,13.5s13.5-6,13.5-13.5c0-6.4,5.2-11.6,11.6-11.6h227 c6.4,0,11.6,5.2,11.6,11.6v325.7c0,6.4-5.2,11.6-11.6,11.6c-7.5,0-13.5,6-13.5,13.5s6,13.5,13.5,13.5c21.3,0,38.6-17.3,38.6-38.6 V38.6C439.65,17.3,422.35,0,401.05,0z"/></g></symbol><symbol id="search-icon" viewBox="0 0 512 512"><g><g><path d="M225.474,0C101.151,0,0,101.151,0,225.474c0,124.33,101.151,225.474,225.474,225.474 c124.33,0,225.474-101.144,225.474-225.474C450.948,101.151,349.804,0,225.474,0z M225.474,409.323 c-101.373,0-183.848-82.475-183.848-183.848S124.101,41.626,225.474,41.626s183.848,82.475,183.848,183.848 S326.847,409.323,225.474,409.323z"/></g></g><g><g><path d="M505.902,476.472L386.574,357.144c-8.131-8.131-21.299-8.131-29.43,0c-8.131,8.124-8.131,21.306,0,29.43l119.328,119.328 c4.065,4.065,9.387,6.098,14.715,6.098c5.321,0,10.649-2.033,14.715-6.098C514.033,497.778,514.033,484.596,505.902,476.472z"/></g></g></symbol><symbol id="font-size-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M11.246 15H4.754l-2 5H.6L7 4h2l6.4 16h-2.154l-2-5zm-.8-2L8 6.885 5.554 13h4.892zM21 12.535V12h2v8h-2v-.535a4 4 0 1 1 0-6.93zM19 18a2 2 0 1 0 0-4 2 2 0 0 0 0 4z"/></symbol><symbol id="add-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M11 11V5h2v6h6v2h-6v6h-2v-6H5v-2z"/></symbol><symbol id="minus-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M5 11h14v2H5z"/></symbol><symbol id="dark-theme-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M10 7a7 7 0 0 0 12 4.9v.1c0 5.523-4.477 10-10 10S2 17.523 2 12 6.477 2 12 2h.1A6.979 6.979 0 0 0 10 7zm-6 5a8 8 0 0 0 15.062 3.762A9 9 0 0 1 8.238 4.938 7.999 7.999 0 0 0 4 12z"/></symbol><symbol id="light-theme-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M12 18a6 6 0 1 1 0-12 6 6 0 0 1 0 12zm0-2a4 4 0 1 0 0-8 4 4 0 0 0 0 8zM11 1h2v3h-2V1zm0 19h2v3h-2v-3zM3.515 4.929l1.414-1.414L7.05 5.636 5.636 7.05 3.515 4.93zM16.95 18.364l1.414-1.414 2.121 2.121-1.414 1.414-2.121-2.121zm2.121-14.85l1.414 1.415-2.121 2.121-1.414-1.414 2.121-2.121zM5.636 16.95l1.414 1.414-2.121 2.121-1.414-1.414 2.121-2.121zM23 11v2h-3v-2h3zM4 11v2H1v-2h3z"/></symbol><symbol id="reset-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M18.537 19.567A9.961 9.961 0 0 1 12 22C6.477 22 2 17.523 2 12S6.477 2 12 2s10 4.477 10 10c0 2.136-.67 4.116-1.81 5.74L17 12h3a8 8 0 1 0-2.46 5.772l.997 1.795z"/></symbol><symbol id="down-icon" viewBox="0 0 16 16"><path fill-rule="evenodd" clip-rule="evenodd" d="M12.7803 6.21967C13.0732 6.51256 13.0732 6.98744 12.7803 7.28033L8.53033 11.5303C8.23744 11.8232 7.76256 11.8232 7.46967 11.5303L3.21967 7.28033C2.92678 6.98744 2.92678 6.51256 3.21967 6.21967C3.51256 5.92678 3.98744 5.92678 4.28033 6.21967L8 9.93934L11.7197 6.21967C12.0126 5.92678 12.4874 5.92678 12.7803 6.21967Z"></path></symbol><symbol id="codepen-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M16.5 13.202L13 15.535v3.596L19.197 15 16.5 13.202zM14.697 12L12 10.202 9.303 12 12 13.798 14.697 12zM20 10.869L18.303 12 20 13.131V10.87zM19.197 9L13 4.869v3.596l3.5 2.333L19.197 9zM7.5 10.798L11 8.465V4.869L4.803 9 7.5 10.798zM4.803 15L11 19.131v-3.596l-3.5-2.333L4.803 15zM4 13.131L5.697 12 4 10.869v2.262zM2 9a1 1 0 0 1 .445-.832l9-6a1 1 0 0 1 1.11 0l9 6A1 1 0 0 1 22 9v6a1 1 0 0 1-.445.832l-9 6a1 1 0 0 1-1.11 0l-9-6A1 1 0 0 1 2 15V9z"/></symbol><symbol id="close-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M12 10.586l4.95-4.95 1.414 1.414-4.95 4.95 4.95 4.95-1.414 1.414-4.95-4.95-4.95 4.95-1.414-1.414 4.95-4.95-4.95-4.95L7.05 5.636z"/></symbol><symbol id="menu-icon" viewBox="0 0 24 24"><path fill="none" d="M0 0h24v24H0z"/><path d="M3 4h18v2H3V4zm0 7h18v2H3v-2zm0 7h18v2H3v-2z"/></symbol></defs></svg></head><body data-theme="light"><div class="sidebar-container"><div class="sidebar" id="sidebar"><a href="/" class="sidebar-title sidebar-title-anchor">3Dmol.js</a><div class="sidebar-items-container"><div class="sidebar-section-title with-arrow" data-isopen="false" id="mei5HJjYKLn6aua5Z5PM5"><div>Classes</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="$3Dmol.Label.html">Label</a></div><div class="sidebar-section-children"><a href="$3Dmol.StateManager.html">StateManager</a></div><div class="sidebar-section-children"><a href="$3Dmol.UI.html">UI</a></div><div class="sidebar-section-children"><a href="Color.html">Color</a></div><div class="sidebar-section-children"><a href="CustomLinear.html">CustomLinear</a></div><div class="sidebar-section-children"><a href="Cylinder.html">Cylinder</a></div><div class="sidebar-section-children"><a href="GLModel.html">GLModel</a></div><div class="sidebar-section-children"><a href="GLShape.html">GLShape</a></div><div class="sidebar-section-children"><a href="GLShape_GLShape.html">GLShape</a></div><div class="sidebar-section-children"><a href="GLViewer.html">GLViewer</a></div><div class="sidebar-section-children"><a href="GLVolumetricRender.html">GLVolumetricRender</a></div><div class="sidebar-section-children"><a href="Matrix3.html">Matrix3</a></div><div class="sidebar-section-children"><a href="Matrix4.html">Matrix4</a></div><div class="sidebar-section-children"><a href="Quaternion.html">Quaternion</a></div><div class="sidebar-section-children"><a href="ROYGB.html">ROYGB</a></div><div class="sidebar-section-children"><a href="RWB.html">RWB</a></div><div class="sidebar-section-children"><a href="Ray.html">Ray</a></div><div class="sidebar-section-children"><a href="Sinebow.html">Sinebow</a></div><div class="sidebar-section-children"><a href="Sphere.html">Sphere</a></div><div class="sidebar-section-children"><a href="Surface.html">Surface</a></div><div class="sidebar-section-children"><a href="Triangle.html">Triangle</a></div><div class="sidebar-section-children"><a href="Vector2.html">Vector2</a></div><div class="sidebar-section-children"><a href="Vector3.html">Vector3</a></div><div class="sidebar-section-children"><a href="VolumeData.html">VolumeData</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="kv4Yx5z0THf_b8XR4Gje1"><div>Namespaces</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="GLDraw.html">GLDraw</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="ykThSufQWJcKGT1kXzr-A"><div>Tutorials</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="tutorial-code.html">Using 3Dmol within your code</a></div><div class="sidebar-section-children"><a href="tutorial-embeddable.html">Embedding a 3Dmol Viewer</a></div><div class="sidebar-section-children"><a href="tutorial-home.html">3Dmol Tutorials - Home</a></div><div class="sidebar-section-children"><a href="tutorial-learning_environment.html">Active Learning with 3Dmol.js</a></div><div class="sidebar-section-children"><a href="tutorial-url.html">Viewing Molecules with the 3Dmol Server</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="XcP4RUEg6tp7YKHbBVi9E"><div>Interfaces</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="AmbientOcclusionStyle.html">AmbientOcclusionStyle</a></div><div class="sidebar-section-children"><a href="ArrowSpec.html">ArrowSpec</a></div><div class="sidebar-section-children"><a href="AtomSelectionSpec.html">AtomSelectionSpec</a></div><div class="sidebar-section-children"><a href="AtomSpec.html">AtomSpec</a></div><div class="sidebar-section-children"><a href="AtomStyleSpec.html">AtomStyleSpec</a></div><div class="sidebar-section-children"><a href="BondStyle.html">BondStyle</a></div><div class="sidebar-section-children"><a href="BoxSpec.html">BoxSpec</a></div><div class="sidebar-section-children"><a href="CartoonStyleSpec.html">CartoonStyleSpec</a></div><div class="sidebar-section-children"><a href="ClickSphereStyleSpec.html">ClickSphereStyleSpec</a></div><div class="sidebar-section-children"><a href="CrossStyleSpec.html">CrossStyleSpec</a></div><div class="sidebar-section-children"><a href="CurveSpec.html">CurveSpec</a></div><div class="sidebar-section-children"><a href="CustomShapeSpec.html">CustomShapeSpec</a></div><div class="sidebar-section-children"><a href="CylinderSpec.html">CylinderSpec</a></div><div class="sidebar-section-children"><a href="DashedBondSpec.html">DashedBondSpec</a></div><div class="sidebar-section-children"><a href="FogSpec.html">FogSpec</a></div><div class="sidebar-section-children"><a href="IsoSurfaceSpec.html">IsoSurfaceSpec</a></div><div class="sidebar-section-children"><a href="LabelSpec.html">LabelSpec</a></div><div class="sidebar-section-children"><a href="LineSpec.html">LineSpec</a></div><div class="sidebar-section-children"><a href="LineStyleSpec.html">LineStyleSpec</a></div><div class="sidebar-section-children"><a href="OutlineStyle.html">OutlineStyle</a></div><div class="sidebar-section-children"><a href="ParserOptionsSpec.html">ParserOptionsSpec</a></div><div class="sidebar-section-children"><a href="ShapeSpec.html">ShapeSpec</a></div><div class="sidebar-section-children"><a href="SphereSpec.html">SphereSpec</a></div><div class="sidebar-section-children"><a href="SphereStyleSpec.html">SphereStyleSpec</a></div><div class="sidebar-section-children"><a href="StickStyleSpec.html">StickStyleSpec</a></div><div class="sidebar-section-children"><a href="SurfaceStyleSpec.html">SurfaceStyleSpec</a></div><div class="sidebar-section-children"><a href="UnitCellStyleSpec.html">UnitCellStyleSpec</a></div><div class="sidebar-section-children"><a href="ViewStyle.html">ViewStyle</a></div><div class="sidebar-section-children"><a href="ViewerGridSpec.html">ViewerGridSpec</a></div><div class="sidebar-section-children"><a href="ViewerSpec.html">ViewerSpec</a></div><div class="sidebar-section-children"><a href="VolumetricRendererSpec.html">VolumetricRendererSpec</a></div><div class="sidebar-section-children"><a href="WithinSelectionSpec.html">WithinSelectionSpec</a></div><div class="sidebar-section-children"><a href="global.html#XYZ">XYZ</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="jmKnIXRJjdjZ366ci7cdd"><div>Global</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="global.html#BCIF">BCIF</a></div><div class="sidebar-section-children"><a href="global.html#CAP">CAP</a></div><div class="sidebar-section-children"><a href="global.html#CDJSON">CDJSON</a></div><div class="sidebar-section-children"><a href="global.html#CIF">CIF</a></div><div class="sidebar-section-children"><a href="global.html#CUBE">CUBE</a></div><div class="sidebar-section-children"><a href="global.html#ColorSpec">ColorSpec</a></div><div class="sidebar-section-children"><a href="global.html#ColorschemeSpec">ColorschemeSpec</a></div><div class="sidebar-section-children"><a href="global.html#GRO">GRO</a></div><div class="sidebar-section-children"><a href="global.html#GradientSpec">GradientSpec</a></div><div class="sidebar-section-children"><a href="global.html#MMTFparser">MMTFparser</a></div><div class="sidebar-section-children"><a href="global.html#MOL2">MOL2</a></div><div class="sidebar-section-children"><a href="global.html#OFFSETS">OFFSETS</a></div><div class="sidebar-section-children"><a href="global.html#PDB">PDB</a></div><div class="sidebar-section-children"><a href="global.html#PQR">PQR</a></div><div class="sidebar-section-children"><a href="global.html#PRMTOP">PRMTOP</a></div><div class="sidebar-section-children"><a href="global.html#SDF">SDF</a></div><div class="sidebar-section-children"><a href="global.html#SurfaceType">SurfaceType</a></div><div class="sidebar-section-children"><a href="global.html#VASP">VASP</a></div><div class="sidebar-section-children"><a href="global.html#XYZ">XYZ</a></div><div class="sidebar-section-children"><a href="global.html#assignPDBBonds">assignPDBBonds</a></div><div class="sidebar-section-children"><a href="global.html#builtinColorSchemes">builtinColorSchemes</a></div><div class="sidebar-section-children"><a href="global.html#builtinGradients">builtinGradients</a></div><div class="sidebar-section-children"><a href="global.html#conversionMatrix3">conversionMatrix3</a></div><div class="sidebar-section-children"><a href="global.html#createViewer">createViewer</a></div><div class="sidebar-section-children"><a href="global.html#createViewerGrid">createViewerGrid</a></div><div class="sidebar-section-children"><a href="global.html#decode">decode</a></div><div class="sidebar-section-children"><a href="global.html#dic">dic</a></div><div class="sidebar-section-children"><a href="global.html#download">download</a></div><div class="sidebar-section-children"><a href="global.html#elementColors">elementColors</a></div><div class="sidebar-section-children"><a href="global.html#get">get</a></div><div class="sidebar-section-children"><a href="global.html#getColorFromStyle">getColorFromStyle</a></div><div class="sidebar-section-children"><a href="global.html#getbin">getbin</a></div><div class="sidebar-section-children"><a href="global.html#parseV3000">parseV3000</a></div><div class="sidebar-section-children"><a href="global.html#setSyncSurface">setSyncSurface</a></div><div class="sidebar-section-children"><a href="global.html#ssColors">ssColors</a></div><div class="sidebar-section-children"><a href="global.html#syncSurface">syncSurface</a></div><div class="sidebar-section-children"><a href="global.html#viewers">viewers</a></div></div></div></div></div><div class="navbar-container" id="VuAckcnZhf"><nav class="navbar"><div class="navbar-left-items"><div class="navbar-item"><a id="" href="https://3dmol.org/doc/index.html" target="">Documentation</a></div><div class="navbar-item"><a id="" href="tutorial-home.html" target="">Tutorials</a></div><div class="navbar-item"><a id="" href="https://github.com/3dmol/3Dmol.js" target="_blank">GitHub</a></div></div><div class="navbar-right-items"><div class="navbar-right-item"><button class="icon-button search-button" aria-label="open-search"><svg><use xlink:href="#search-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button theme-toggle" aria-label="toggle-theme"><svg><use class="theme-svg-use" xlink:href="#dark-theme-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button font-size" aria-label="change-font-size"><svg><use xlink:href="#font-size-icon"></use></svg></button></div></div><nav></nav></nav></div><div class="toc-container"><div class="toc-content"><span class="bold">On this page</span><div id="eed4d2a0bfd64539bb9df78095dec881"></div></div></div><div class="body-wrapper"><div class="main-content"><div class="main-wrapper"><section id="source-page" class="source-page"><header><h1 id="title" class="has-anchor">parsers_ParserOptionsSpec.ts</h1></header><article><pre class="prettyprint source lang-js"><code>/**
* File formats supported by 3Dmol.js
* @typedef FileFormats
* @category Parsers
* @prop cdjson,json Chemical JSON format
* @prop cube Gaussian cube format
* @prop gro Gromacs topology format, need to add coordinates to resulting model.
* @prop mcif,cif Crystallographic Information File, the successor to PDB that makes you miss the PDB file format
* @prop mmtf Macromolecular Transmission Format, the successor to PDB that is totally awesome
* @prop mol2 Sybyl Mol2 format
* @prop pdb The venerable Protein Data Bank format
* @prop pqr Like PDB but with partial charges which are read into the partialcharge atom property
* @prop prmtop Amber topology file, must add coordinates
* @prop sdf MDL MOL format, supports multiple models and meta data
* @prop vasp VASP format (CONTCAR, POSCAR)
* @prop xyz XYZ cartesian coordinates format
*/
import { AtomStyleSpec } from "GLModel";
/**
* Parser options specification. Used to specify the options of a GLModel. Depending on the input file format, not all fields may be defined.
* @category Parsers
*/
export interface ParserOptionsSpec {
/** true if you want to add to a new frame and false otherwise ; supported by all */
frames?: boolean;
/** object specifying the vibration behavior ; supported by all */
vibrate?: {
/** vibrate.frames - number of frames to be created, default to 10 ; supported by all */
frames?: number;
/** vibrate.amplitude -amplitude of distortion, default to 1 (full) ; supported by all */
amplitude?: number
};
/** specifies whether or not multiple models are being defined ; supported by xyz,sdf, or mol2 */
multimodel?: boolean;
/** specifies weather or not the model is of one molecule ; Supported by xyz , sdf , mol2 */
onemol?: boolean;
/** do not strip hydrogens ; supported by sdf,mol2 */
keepH?: boolean;
/** used to define ChemDoodle styles ; supported by cdjson */
parseStyle?: unknown;
/** boolean dictating weather or not to do assembly ; supported by mcif, pdb */
doAssembly?: boolean;
/** Set to true if you wish to duplicate assembly atoms otherwise false ; supported by all formats with symmetries. Not duplicating will result in faster rendering but it will not be possible to individually style symmetries. */
duplicateAssemblyAtoms?: boolean;
/** Set to true with duplicateAssemblyAtoms to individually wrap atoms (from symmetries) into unit cell */
wrapAtoms?: boolean;
/** shift symmetry mates so their centroid is in the unit cell */
normalizeAssembly?: boolean;
/** do not detect bonds between symmetries generated with duplicateAssemblyAtoms (cif only - other formats never make bonds between symmetries) */
dontConnectDuplicatedAtoms?: boolean;
/** boolean dictating the presence of a secondary structure ; supported by pdb */
noSecondaryStructure?: boolean;
/** do not compute ss ; supported by pdb, mmtf, cif */
noComputeSecondaryStructure?: boolean;
/** maximum distance used for identifying hydrogen bonds when computing secondary structure; supported by pdb, mmtf, cif */
hbondCutoff?: number;
/** which alternate location to select, if present; '*' to load all ; supported by pdb */
altLoc?: string;
/** index of the assembly in symmetry ; supported by mmtf */
assemblyIndex?: number;
/** for formats without explicit bonds (e.g. PDB, xyz) infer bonding (default true). */
assignBonds?: boolean;
/** for formats without explicit bonds, if assigning bonds to not assign bonds to common cations */
unboundCations?: boolean;
/** set model to this style after parsing */
style?: AtomStyleSpec;
};</code></pre></article></section><footer class="footer" id="PeOAagUepe"><div class="wrapper">3Dmol.js © 2019-2024 | <a href="https://pitt.edu/" target="_blank">University of Pittsburgh</a> | <a href="https://github.com/3dmol/3Dmol.js/blob/master/LICENSE" target="_blank">License</a></div></footer></div></div></div><div class="search-container" id="PkfLWpAbet" style="display:none"><div class="wrapper" id="iCxFxjkHbP"><button class="icon-button search-close-button" id="VjLlGakifb" aria-label="close search"><svg><use xlink:href="#close-icon"></use></svg></button><div class="search-box-c"><svg><use xlink:href="#search-icon"></use></svg> <input type="text" id="vpcKVYIppa" class="search-input" placeholder="Search..." autofocus></div><div class="search-result-c" id="fWwVHRuDuN"><span class="search-result-c-text">Type anything to view search result</span></div></div></div><div class="mobile-menu-icon-container"><button class="icon-button" id="mobile-menu" data-isopen="false" aria-label="menu"><svg><use xlink:href="#menu-icon"></use></svg></button></div><div id="mobile-sidebar" class="mobile-sidebar-container"><div class="mobile-sidebar-wrapper"><a href="/" class="sidebar-title sidebar-title-anchor">3Dmol.js</a><div class="mobile-nav-links"><div class="navbar-item"><a id="" href="https://3dmol.org/doc/index.html" target="">Documentation</a></div><div class="navbar-item"><a id="" href="tutorial-home.html" target="">Tutorials</a></div><div class="navbar-item"><a id="" href="https://github.com/3dmol/3Dmol.js" target="_blank">GitHub</a></div></div><div class="mobile-sidebar-items-c"><div class="sidebar-section-title with-arrow" data-isopen="false" id="mei5HJjYKLn6aua5Z5PM5"><div>Classes</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="$3Dmol.Label.html">Label</a></div><div class="sidebar-section-children"><a href="$3Dmol.StateManager.html">StateManager</a></div><div class="sidebar-section-children"><a href="$3Dmol.UI.html">UI</a></div><div class="sidebar-section-children"><a href="Color.html">Color</a></div><div class="sidebar-section-children"><a href="CustomLinear.html">CustomLinear</a></div><div class="sidebar-section-children"><a href="Cylinder.html">Cylinder</a></div><div class="sidebar-section-children"><a href="GLModel.html">GLModel</a></div><div class="sidebar-section-children"><a href="GLShape.html">GLShape</a></div><div class="sidebar-section-children"><a href="GLShape_GLShape.html">GLShape</a></div><div class="sidebar-section-children"><a href="GLViewer.html">GLViewer</a></div><div class="sidebar-section-children"><a href="GLVolumetricRender.html">GLVolumetricRender</a></div><div class="sidebar-section-children"><a href="Matrix3.html">Matrix3</a></div><div class="sidebar-section-children"><a href="Matrix4.html">Matrix4</a></div><div class="sidebar-section-children"><a href="Quaternion.html">Quaternion</a></div><div class="sidebar-section-children"><a href="ROYGB.html">ROYGB</a></div><div class="sidebar-section-children"><a href="RWB.html">RWB</a></div><div class="sidebar-section-children"><a href="Ray.html">Ray</a></div><div class="sidebar-section-children"><a href="Sinebow.html">Sinebow</a></div><div class="sidebar-section-children"><a href="Sphere.html">Sphere</a></div><div class="sidebar-section-children"><a href="Surface.html">Surface</a></div><div class="sidebar-section-children"><a href="Triangle.html">Triangle</a></div><div class="sidebar-section-children"><a href="Vector2.html">Vector2</a></div><div class="sidebar-section-children"><a href="Vector3.html">Vector3</a></div><div class="sidebar-section-children"><a href="VolumeData.html">VolumeData</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="kv4Yx5z0THf_b8XR4Gje1"><div>Namespaces</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="GLDraw.html">GLDraw</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="ykThSufQWJcKGT1kXzr-A"><div>Tutorials</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="tutorial-code.html">Using 3Dmol within your code</a></div><div class="sidebar-section-children"><a href="tutorial-embeddable.html">Embedding a 3Dmol Viewer</a></div><div class="sidebar-section-children"><a href="tutorial-home.html">3Dmol Tutorials - Home</a></div><div class="sidebar-section-children"><a href="tutorial-learning_environment.html">Active Learning with 3Dmol.js</a></div><div class="sidebar-section-children"><a href="tutorial-url.html">Viewing Molecules with the 3Dmol Server</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="XcP4RUEg6tp7YKHbBVi9E"><div>Interfaces</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="AmbientOcclusionStyle.html">AmbientOcclusionStyle</a></div><div class="sidebar-section-children"><a href="ArrowSpec.html">ArrowSpec</a></div><div class="sidebar-section-children"><a href="AtomSelectionSpec.html">AtomSelectionSpec</a></div><div class="sidebar-section-children"><a href="AtomSpec.html">AtomSpec</a></div><div class="sidebar-section-children"><a href="AtomStyleSpec.html">AtomStyleSpec</a></div><div class="sidebar-section-children"><a href="BondStyle.html">BondStyle</a></div><div class="sidebar-section-children"><a href="BoxSpec.html">BoxSpec</a></div><div class="sidebar-section-children"><a href="CartoonStyleSpec.html">CartoonStyleSpec</a></div><div class="sidebar-section-children"><a href="ClickSphereStyleSpec.html">ClickSphereStyleSpec</a></div><div class="sidebar-section-children"><a href="CrossStyleSpec.html">CrossStyleSpec</a></div><div class="sidebar-section-children"><a href="CurveSpec.html">CurveSpec</a></div><div class="sidebar-section-children"><a href="CustomShapeSpec.html">CustomShapeSpec</a></div><div class="sidebar-section-children"><a href="CylinderSpec.html">CylinderSpec</a></div><div class="sidebar-section-children"><a href="DashedBondSpec.html">DashedBondSpec</a></div><div class="sidebar-section-children"><a href="FogSpec.html">FogSpec</a></div><div class="sidebar-section-children"><a href="IsoSurfaceSpec.html">IsoSurfaceSpec</a></div><div class="sidebar-section-children"><a href="LabelSpec.html">LabelSpec</a></div><div class="sidebar-section-children"><a href="LineSpec.html">LineSpec</a></div><div class="sidebar-section-children"><a href="LineStyleSpec.html">LineStyleSpec</a></div><div class="sidebar-section-children"><a href="OutlineStyle.html">OutlineStyle</a></div><div class="sidebar-section-children"><a href="ParserOptionsSpec.html">ParserOptionsSpec</a></div><div class="sidebar-section-children"><a href="ShapeSpec.html">ShapeSpec</a></div><div class="sidebar-section-children"><a href="SphereSpec.html">SphereSpec</a></div><div class="sidebar-section-children"><a href="SphereStyleSpec.html">SphereStyleSpec</a></div><div class="sidebar-section-children"><a href="StickStyleSpec.html">StickStyleSpec</a></div><div class="sidebar-section-children"><a href="SurfaceStyleSpec.html">SurfaceStyleSpec</a></div><div class="sidebar-section-children"><a href="UnitCellStyleSpec.html">UnitCellStyleSpec</a></div><div class="sidebar-section-children"><a href="ViewStyle.html">ViewStyle</a></div><div class="sidebar-section-children"><a href="ViewerGridSpec.html">ViewerGridSpec</a></div><div class="sidebar-section-children"><a href="ViewerSpec.html">ViewerSpec</a></div><div class="sidebar-section-children"><a href="VolumetricRendererSpec.html">VolumetricRendererSpec</a></div><div class="sidebar-section-children"><a href="WithinSelectionSpec.html">WithinSelectionSpec</a></div><div class="sidebar-section-children"><a href="global.html#XYZ">XYZ</a></div></div><div class="sidebar-section-title with-arrow" data-isopen="false" id="jmKnIXRJjdjZ366ci7cdd"><div>Global</div><svg><use xlink:href="#down-icon"></use></svg></div><div class="sidebar-section-children-container"><div class="sidebar-section-children"><a href="global.html#BCIF">BCIF</a></div><div class="sidebar-section-children"><a href="global.html#CAP">CAP</a></div><div class="sidebar-section-children"><a href="global.html#CDJSON">CDJSON</a></div><div class="sidebar-section-children"><a href="global.html#CIF">CIF</a></div><div class="sidebar-section-children"><a href="global.html#CUBE">CUBE</a></div><div class="sidebar-section-children"><a href="global.html#ColorSpec">ColorSpec</a></div><div class="sidebar-section-children"><a href="global.html#ColorschemeSpec">ColorschemeSpec</a></div><div class="sidebar-section-children"><a href="global.html#GRO">GRO</a></div><div class="sidebar-section-children"><a href="global.html#GradientSpec">GradientSpec</a></div><div class="sidebar-section-children"><a href="global.html#MMTFparser">MMTFparser</a></div><div class="sidebar-section-children"><a href="global.html#MOL2">MOL2</a></div><div class="sidebar-section-children"><a href="global.html#OFFSETS">OFFSETS</a></div><div class="sidebar-section-children"><a href="global.html#PDB">PDB</a></div><div class="sidebar-section-children"><a href="global.html#PQR">PQR</a></div><div class="sidebar-section-children"><a href="global.html#PRMTOP">PRMTOP</a></div><div class="sidebar-section-children"><a href="global.html#SDF">SDF</a></div><div class="sidebar-section-children"><a href="global.html#SurfaceType">SurfaceType</a></div><div class="sidebar-section-children"><a href="global.html#VASP">VASP</a></div><div class="sidebar-section-children"><a href="global.html#XYZ">XYZ</a></div><div class="sidebar-section-children"><a href="global.html#assignPDBBonds">assignPDBBonds</a></div><div class="sidebar-section-children"><a href="global.html#builtinColorSchemes">builtinColorSchemes</a></div><div class="sidebar-section-children"><a href="global.html#builtinGradients">builtinGradients</a></div><div class="sidebar-section-children"><a href="global.html#conversionMatrix3">conversionMatrix3</a></div><div class="sidebar-section-children"><a href="global.html#createViewer">createViewer</a></div><div class="sidebar-section-children"><a href="global.html#createViewerGrid">createViewerGrid</a></div><div class="sidebar-section-children"><a href="global.html#decode">decode</a></div><div class="sidebar-section-children"><a href="global.html#dic">dic</a></div><div class="sidebar-section-children"><a href="global.html#download">download</a></div><div class="sidebar-section-children"><a href="global.html#elementColors">elementColors</a></div><div class="sidebar-section-children"><a href="global.html#get">get</a></div><div class="sidebar-section-children"><a href="global.html#getColorFromStyle">getColorFromStyle</a></div><div class="sidebar-section-children"><a href="global.html#getbin">getbin</a></div><div class="sidebar-section-children"><a href="global.html#parseV3000">parseV3000</a></div><div class="sidebar-section-children"><a href="global.html#setSyncSurface">setSyncSurface</a></div><div class="sidebar-section-children"><a href="global.html#ssColors">ssColors</a></div><div class="sidebar-section-children"><a href="global.html#syncSurface">syncSurface</a></div><div class="sidebar-section-children"><a href="global.html#viewers">viewers</a></div></div></div><div class="mobile-navbar-actions"><div class="navbar-right-item"><button class="icon-button search-button" aria-label="open-search"><svg><use xlink:href="#search-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button theme-toggle" aria-label="toggle-theme"><svg><use class="theme-svg-use" xlink:href="#dark-theme-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button font-size" aria-label="change-font-size"><svg><use xlink:href="#font-size-icon"></use></svg></button></div></div></div></div><script type="text/javascript" src="scripts/core.min.js"></script><script src="scripts/search.min.js" defer="defer"></script><script src="scripts/third-party/fuse.js" defer="defer"></script><script type="text/javascript">var tocbotInstance=tocbot.init({tocSelector:"#eed4d2a0bfd64539bb9df78095dec881",contentSelector:".main-content",headingSelector:"h1, h2, h3",hasInnerContainers:!0,scrollContainer:".main-content",headingsOffset:130,onClick:bringLinkToView})</script></body></html>