3dmol

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JavaScript/TypeScript molecular visualization library

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{"list":[{"title":"$3Dmol.Label","link":"<a href=\"$3Dmol.Label.html\">Label</a>","description":"Renderable labels"},{"title":"$3Dmol.StateManager","link":"<a href=\"$3Dmol.StateManager.html\">StateManager</a>","description":"$3Dmol.StateManager - StateManager creates the space to preserve the state of the ui and sync it with the GLViewer"},{"title":"$3Dmol.StateManager#addAtomLabel","link":"<a href=\"$3Dmol.StateManager.html#addAtomLabel\">addAtomLabel</a>","description":"Adds atom label to the viewport"},{"title":"$3Dmol.StateManager#addLabel","link":"<a href=\"$3Dmol.StateManager.html#addLabel\">addLabel</a>","description":"Adds Label to the viewport specific to the selection"},{"title":"$3Dmol.StateManager#addModel","link":"<a href=\"$3Dmol.StateManager.html#addModel\">addModel</a>","description":"Add model to the viewport"},{"title":"$3Dmol.StateManager#addSelection","link":"<a href=\"$3Dmol.StateManager.html#addSelection\">addSelection</a>","description":"Add Selection from the ui to glviewer"},{"title":"$3Dmol.StateManager#addStyle","link":"<a href=\"$3Dmol.StateManager.html#addStyle\">addStyle</a>","description":"Add style and renders it into the viewport"},{"title":"$3Dmol.StateManager#addSurface","link":"<a href=\"$3Dmol.StateManager.html#addSurface\">addSurface</a>","description":"Adds surface to the viewport"},{"title":"$3Dmol.StateManager#checkAtoms","link":"<a href=\"$3Dmol.StateManager.html#checkAtoms\">checkAtoms</a>","description":"Return true if the selections contain at least one atom"},{"title":"$3Dmol.StateManager#createSelectionAndStyle","link":"<a href=\"$3Dmol.StateManager.html#createSelectionAndStyle\">createSelectionAndStyle</a>","description":"Updates the state variable for selections and styles and trigger ui to show the \nui elements for these selections and styles."},{"title":"$3Dmol.StateManager#createSurface","link":"<a href=\"$3Dmol.StateManager.html#createSurface\">createSurface</a>","description":"Creates selection and add surface with reference to that selection \nand triggers updates in the ui"},{"title":"$3Dmol.StateManager#editSurface","link":"<a href=\"$3Dmol.StateManager.html#editSurface\">editSurface</a>","description":"Edit the exisiting surface in the viewport"},{"title":"$3Dmol.StateManager#exitContextMenu","link":"<a href=\"$3Dmol.StateManager.html#exitContextMenu\">exitContextMenu</a>","description":"Executes hide context menu and process the label if needed"},{"title":"$3Dmol.StateManager#getSelectionList","link":"<a href=\"$3Dmol.StateManager.html#getSelectionList\">getSelectionList</a>","description":"Returns the list of ids of selections that are created so far"},{"title":"$3Dmol.StateManager#openContextMenu","link":"<a href=\"$3Dmol.StateManager.html#openContextMenu\">openContextMenu</a>","description":"Opens context menu when called from glviewer"},{"title":"$3Dmol.StateManager#removeAtomLabel","link":"<a href=\"$3Dmol.StateManager.html#removeAtomLabel\">removeAtomLabel</a>","description":"Removes the atom label from the viewpoer"},{"title":"$3Dmol.StateManager#removeStyle","link":"<a href=\"$3Dmol.StateManager.html#removeStyle\">removeStyle</a>","description":"Removes the style specified by stid"},{"title":"$3Dmol.StateManager#removeSurface","link":"<a href=\"$3Dmol.StateManager.html#removeSurface\">removeSurface</a>","description":"Removes surface from the viewport"},{"title":"$3Dmol.StateManager#setModelTitle","link":"<a href=\"$3Dmol.StateManager.html#setModelTitle\">setModelTitle</a>","description":"Sets the value of title in ModelToolBar"},{"title":"$3Dmol.StateManager#toggleHide","link":"<a href=\"$3Dmol.StateManager.html#toggleHide\">toggleHide</a>","description":"Toggle the hidden property of the selection"},{"title":"$3Dmol.StateManager#toggleHideStyle","link":"<a href=\"$3Dmol.StateManager.html#toggleHideStyle\">toggleHideStyle</a>","description":"Toggle hidden property of a style"},{"title":"$3Dmol.StateManager#updateUI","link":"<a href=\"$3Dmol.StateManager.html#updateUI\">updateUI</a>","description":"Updates the UI on viewport change"},{"title":"$3Dmol.UI","link":"<a href=\"$3Dmol.UI.html\">UI</a>","description":"$3Dmol.UI - UI creates panels in the viewer to assist control of the viewport"},{"title":"$3Dmol.UI#Form","link":"<a href=\"$3Dmol.UI.html#Form\">Form</a>","description":"This is a colection of contructor to make different input element"},{"title":"$3Dmol.UI#Form","link":"<a href=\"$3Dmol.UI.html#Form\">Form</a>","description":"Creates Form input that takes input from different input element"},{"title":"$3Dmol.UI#Form.Checkbox","link":"<a href=\"$3Dmol.UI.html#Form#.Checkbox\">Checkbox</a>","description":"Create Checkbox input for boolean values"},{"title":"$3Dmol.UI#Form.Color","link":"<a href=\"$3Dmol.UI.html#Form#.Color\">Color</a>","description":"Create Color input"},{"title":"$3Dmol.UI#Form.EmptyElement","link":"<a href=\"$3Dmol.UI.html#Form#.EmptyElement\">EmptyElement</a>","description":"Create empty element used for property that whose input cannot be taken"},{"title":"$3Dmol.UI#Form.Input","link":"<a href=\"$3Dmol.UI.html#Form#.Input\">Input</a>","description":"Create text, numeric or range Input"},{"title":"$3Dmol.UI#Form.ListInput","link":"<a href=\"$3Dmol.UI.html#Form#.ListInput\">ListInput</a>","description":"Create ListInput input"},{"title":"$3Dmol.UI#Form.Slider","link":"<a href=\"$3Dmol.UI.html#Form#.Slider\">Slider</a>","description":"Create input for values between two numbers"},{"title":"$3Dmol.UI#Icons","link":"<a href=\"$3Dmol.UI.html#Icons\">Icons</a>","description":"Generates the object to hold different icons present Icons : move, rotate, pencil, listArrow, option, minus, plus, painbrush, select, movie.play, move.pause, movie.stop, movie.next, move.previous, tick, cross, edit, remove, list, style, visible, invisible, mouse, nomouse, label, surface, molecule, change"},{"title":"$3Dmol.UI#resize","link":"<a href=\"$3Dmol.UI.html#resize\">resize</a>","description":"Resize the panel with respect to the new viewport"},{"title":"$3Dmol.VolumeData.getIndex","link":"<a href=\"$3Dmol.VolumeData.html#.getIndex\">getIndex</a>"},{"title":"$3Dmol.VolumeData.getIndex","link":"<a href=\"$3Dmol.VolumeData.html#.getIndex\">getIndex</a>"},{"title":"$3Dmol.VolumeData.getVal","link":"<a href=\"$3Dmol.VolumeData.html#.getVal\">getVal</a>"},{"title":"$3Dmol.VolumeData.getVal","link":"<a href=\"$3Dmol.VolumeData.html#.getVal\">getVal</a>"},{"title":"<anonymous>~States#removeLabel","link":"<a href=\"-_anonymous_-States.html#removeLabel\">removeLabel</a>","description":"Removes the label specific to the selection\n(under development)"},{"title":"<anonymous>~States#removeSelection","link":"<a href=\"-_anonymous_-States.html#removeSelection\">removeSelection</a>","description":"Removes the selection"},{"title":"<anonymous>~States#showUI","link":"<a href=\"-_anonymous_-States.html#showUI\">showUI</a>","description":"Generates the ui and returns its reference"},{"title":"<anonymous>~UI~AlertBox#error","link":"<a href=\"-_anonymous_-UI-AlertBox.html#error\">error</a>","description":"Generate Internal alert message"},{"title":"<anonymous>~UI~AlertBox#message","link":"<a href=\"-_anonymous_-UI-AlertBox.html#message\">message</a>","description":"Generates Internal Info message"},{"title":"<anonymous>~UI~AlertBox#warning","link":"<a href=\"-_anonymous_-UI-AlertBox.html#warning\">warning</a>","description":"Generates Internal warning message"},{"title":"<anonymous>~UI~generateUI","link":"<a href=\"-_anonymous_-UI.html#~generateUI\">generateUI</a>","description":"Creates all the jquery object of different UI features"},{"title":"AmbientOcclusionStyle","link":"<a href=\"AmbientOcclusionStyle.html\">AmbientOcclusionStyle</a>","description":"AmbientOcclusion style configuration parameters"},{"title":"AmbientOcclusionStyle#radius","link":"<a href=\"AmbientOcclusionStyle.html#radius\">radius</a>","description":"Radius (in Angstroms) used to detect occlusions (default 5.0)."},{"title":"AmbientOcclusionStyle#strength","link":"<a href=\"AmbientOcclusionStyle.html#strength\">strength</a>","description":"Strength (darkness) of shading (default 1.0)"},{"title":"ArrowSpec","link":"<a href=\"ArrowSpec.html\">ArrowSpec</a>","description":"Arrow shape specification."},{"title":"ArrowSpec#color","link":"<a href=\"ArrowSpec.html#color\">color</a>","description":"color"},{"title":"ArrowSpec#dir","link":"<a href=\"ArrowSpec.html#dir\">dir</a>","description":"direction to extend from start (instead of specifying end)"},{"title":"ArrowSpec#end","link":"<a href=\"ArrowSpec.html#end\">end</a>","description":"ending position"},{"title":"ArrowSpec#hidden","link":"<a href=\"ArrowSpec.html#hidden\">hidden</a>","description":"hidden"},{"title":"ArrowSpec#length","link":"<a href=\"ArrowSpec.html#length\">length</a>","description":"length to extend in dir direction from start (instead of specifying end)"},{"title":"ArrowSpec#mid","link":"<a href=\"ArrowSpec.html#mid\">mid</a>","description":"relative position of arrow base (0.618034 default)"},{"title":"ArrowSpec#midpos","link":"<a href=\"ArrowSpec.html#midpos\">midpos</a>","description":"position of arrow base in length units, if negative positioned from end instead of start. Overrides mid."},{"title":"ArrowSpec#radius","link":"<a href=\"ArrowSpec.html#radius\">radius</a>","description":"radius (default 0.1A)"},{"title":"ArrowSpec#radiusRatio","link":"<a href=\"ArrowSpec.html#radiusRatio\">radiusRatio</a>","description":"ratio of arrow base to cylinder (1.618034 default)"},{"title":"ArrowSpec#start","link":"<a href=\"ArrowSpec.html#start\">start</a>","description":"starting position"},{"title":"AtomSelectionSpec","link":"<a href=\"AtomSelectionSpec.html\">AtomSelectionSpec</a>","description":"Atom selection object. Used to specify what atoms should be selected. Can include \nany field from {@link AtomSpec} in which case atoms must equal the specified value. \nAll fields must match for the selection to hold. If values \nare provided as a list, then only one value of the list must match."},{"title":"AtomSelectionSpec#and","link":"<a href=\"AtomSelectionSpec.html#and\">and</a>","description":"take the intersection of the provided lists of {@link AtomSelectionSpec}s"},{"title":"AtomSelectionSpec#bonds","link":"<a href=\"AtomSelectionSpec.html#bonds\">bonds</a>","description":"overloaded to select number of bonds, e.g. {bonds: 0} will select all nonbonded atoms"},{"title":"AtomSelectionSpec#byres","link":"<a href=\"AtomSelectionSpec.html#byres\">byres</a>","description":"if set, expands the selection to include all atoms of any residue that has any atom selected"},{"title":"AtomSelectionSpec#expand","link":"<a href=\"AtomSelectionSpec.html#expand\">expand</a>","description":"expands the selection to include all atoms within a given distance from the selection"},{"title":"AtomSelectionSpec#frame","link":"<a href=\"AtomSelectionSpec.html#frame\">frame</a>","description":"frame index of individual frame to style; will apply to all frames if not set"},{"title":"AtomSelectionSpec#index","link":"<a href=\"AtomSelectionSpec.html#index\">index</a>","description":"index of the atom or atoms to select"},{"title":"AtomSelectionSpec#invert","link":"<a href=\"AtomSelectionSpec.html#invert\">invert</a>","description":"if set, inverts the meaning of the selection"},{"title":"AtomSelectionSpec#model","link":"<a href=\"AtomSelectionSpec.html#model\">model</a>","description":"a single model or list of models from which atoms should be selected. Can also specify by numerical creation order. Reverse indexing is allowed (-1 specifies last added model)."},{"title":"AtomSelectionSpec#not","link":"<a href=\"AtomSelectionSpec.html#not\">not</a>","description":"take the inverse of the provided {@link AtomSelectionSpec}"},{"title":"AtomSelectionSpec#or","link":"<a href=\"AtomSelectionSpec.html#or\">or</a>","description":"take the union of the provided lists of {@link AtomSelectionSpec}s"},{"title":"AtomSelectionSpec#predicate","link":"<a href=\"AtomSelectionSpec.html#predicate\">predicate</a>","description":"user supplied function that gets passed an {@link AtomSpec} and should return true if the atom should be selected"},{"title":"AtomSelectionSpec#resi","link":"<a href=\"AtomSelectionSpec.html#resi\">resi</a>","description":"overloaded to allow ranges and lists of residues, e.g. {resi: "5-10"} or {resi: [5,10,32]}"},{"title":"AtomSelectionSpec#within","link":"<a href=\"AtomSelectionSpec.html#within\">within</a>","description":"intersects the selection with the set of atoms within a given distance from another selection"},{"title":"AtomSpec","link":"<a href=\"AtomSpec.html\">AtomSpec</a>","description":"Atom representation. Depending on the input file format, not all fields may be defined."},{"title":"AtomSpec#atom","link":"<a href=\"AtomSpec.html#atom\">atom</a>","description":"Atom name; may be more specific than 'elem' (e.g 'CA' for alpha carbon)"},{"title":"AtomSpec#b","link":"<a href=\"AtomSpec.html#b\">b</a>","description":"Atom b factor data"},{"title":"AtomSpec#bondOrder","link":"<a href=\"AtomSpec.html#bondOrder\">bondOrder</a>","description":"Array of this atom's bond orders, corresponding to bonds identfied by 'bonds'"},{"title":"AtomSpec#bondStyles","link":"<a href=\"AtomSpec.html#bondStyles\">bondStyles</a>","description":"custom bond styling by position in bonds"},{"title":"AtomSpec#bonds","link":"<a href=\"AtomSpec.html#bonds\">bonds</a>","description":"Array of atom ids this atom is bonded to"},{"title":"AtomSpec#callback","link":"<a href=\"AtomSpec.html#callback\">callback</a>","description":"Callback click handler function to be executed on this atom and its parent viewer"},{"title":"AtomSpec#chain","link":"<a href=\"AtomSpec.html#chain\">chain</a>","description":"Chain this atom belongs to, if specified in input file (e.g 'A' for chain A)"},{"title":"AtomSpec#clickable","link":"<a href=\"AtomSpec.html#clickable\">clickable</a>","description":"Set this flag to true to enable click selection handling for this atom"},{"title":"AtomSpec#color","link":"<a href=\"AtomSpec.html#color\">color</a>","description":"Atom's color, as hex code or built-in color string"},{"title":"AtomSpec#elem","link":"<a href=\"AtomSpec.html#elem\">elem</a>","description":"Element abbreviation (e.g. 'H', 'Ca', etc)"},{"title":"AtomSpec#hetflag","link":"<a href=\"AtomSpec.html#hetflag\">hetflag</a>","description":"Set to true if atom is a heteroatom"},{"title":"AtomSpec#hover_callback","link":"<a href=\"AtomSpec.html#hover_callback\">hover_callback</a>","description":"Callback hover handler function to be executed on this atom and its parent viewer"},{"title":"AtomSpec#hoverable","link":"<a href=\"AtomSpec.html#hoverable\">hoverable</a>","description":"Set this flag to true to enable hover selection handling for this atom"},{"title":"AtomSpec#index","link":"<a href=\"AtomSpec.html#index\">index</a>","description":"Index of atom in molecule"},{"title":"AtomSpec#invert","link":"<a href=\"AtomSpec.html#invert\">invert</a>","description":"for selection, inverts the meaning of the selection"},{"title":"AtomSpec#lchain","link":"<a href=\"AtomSpec.html#lchain\">lchain</a>","description":"Label chain (not author)"},{"title":"AtomSpec#lresi","link":"<a href=\"AtomSpec.html#lresi\">lresi</a>","description":"Label residues number (not author)"},{"title":"AtomSpec#lresn","link":"<a href=\"AtomSpec.html#lresn\">lresn</a>","description":"Residue label name"},{"title":"AtomSpec#pdbline","link":"<a href=\"AtomSpec.html#pdbline\">pdbline</a>","description":"If applicable, this atom's record entry from the input PDB file (used to output new PDB from models)"},{"title":"AtomSpec#properties","link":"<a href=\"AtomSpec.html#properties\">properties</a>","description":"Optional mapping of additional properties"},{"title":"AtomSpec#resi","link":"<a href=\"AtomSpec.html#resi\">resi</a>","description":"Residue number"},{"title":"AtomSpec#resn","link":"<a href=\"AtomSpec.html#resn\">resn</a>","description":"Parent residue name"},{"title":"AtomSpec#serial","link":"<a href=\"AtomSpec.html#serial\">serial</a>","description":"Atom's serial id number"},{"title":"AtomSpec#singleBonds","link":"<a href=\"AtomSpec.html#singleBonds\">singleBonds</a>","description":"true if this atom forms only single bonds or no bonds at all"},{"title":"AtomSpec#ss","link":"<a href=\"AtomSpec.html#ss\">ss</a>","description":"Secondary structure identifier (for cartoon render; e.g. 'h' for helix)"},{"title":"AtomSpec#style","link":"<a href=\"AtomSpec.html#style\">style</a>","description":"style of atom"},{"title":"AtomSpec#surfaceColor","link":"<a href=\"AtomSpec.html#surfaceColor\">surfaceColor</a>","description":"Hex code for color to be used for surface patch over this atom"},{"title":"AtomSpec#unhover_callback","link":"<a href=\"AtomSpec.html#unhover_callback\">unhover_callback</a>","description":"Callback handling "unhover" to be executed on this atom and its parent viewer"},{"title":"AtomSpec#x","link":"<a href=\"AtomSpec.html#x\">x</a>","description":"Atom's x coordinate"},{"title":"AtomSpec#y","link":"<a href=\"AtomSpec.html#y\">y</a>","description":"Atom's y coordinate"},{"title":"AtomSpec#z","link":"<a href=\"AtomSpec.html#z\">z</a>","description":"Atom's z coordinate"},{"title":"AtomStyleSpec","link":"<a href=\"AtomStyleSpec.html\">AtomStyleSpec</a>","description":"Atom style specification"},{"title":"AtomStyleSpec#cartoon","link":"<a href=\"AtomStyleSpec.html#cartoon\">cartoon</a>","description":"draw cartoon representation of secondary structure"},{"title":"AtomStyleSpec#clicksphere","link":"<a href=\"AtomStyleSpec.html#clicksphere\">clicksphere</a>","description":"invisible style for click handling only"},{"title":"AtomStyleSpec#cross","link":"<a href=\"AtomStyleSpec.html#cross\">cross</a>","description":"draw atoms as crossed lines (aka stars)"},{"title":"AtomStyleSpec#line","link":"<a href=\"AtomStyleSpec.html#line\">line</a>","description":"draw bonds as lines"},{"title":"AtomStyleSpec#sphere","link":"<a href=\"AtomStyleSpec.html#sphere\">sphere</a>","description":"draw atoms as spheres"},{"title":"AtomStyleSpec#stick","link":"<a href=\"AtomStyleSpec.html#stick\">stick</a>","description":"draw bonds as capped cylinders"},{"title":"BCIF","link":"<a href=\"global.html#BCIF\">BCIF</a>"},{"title":"BondStyle","link":"<a href=\"BondStyle.html\">BondStyle</a>","description":"Style for individual bond."},{"title":"BondStyle#color1","link":"<a href=\"BondStyle.html#color1\">color1</a>"},{"title":"BondStyle#color2","link":"<a href=\"BondStyle.html#color2\">color2</a>"},{"title":"BondStyle#radius","link":"<a href=\"BondStyle.html#radius\">radius</a>"},{"title":"BondStyle#singleBond","link":"<a href=\"BondStyle.html#singleBond\">singleBond</a>"},{"title":"BoxSpec","link":"<a href=\"BoxSpec.html\">BoxSpec</a>","description":"Box shape specification."},{"title":"BoxSpec#center","link":"<a href=\"BoxSpec.html#center\">center</a>","description":"center of box"},{"title":"BoxSpec#corner","link":"<a href=\"BoxSpec.html#corner\">corner</a>","description":"bottom corner of box"},{"title":"BoxSpec#dimensions","link":"<a href=\"BoxSpec.html#dimensions\">dimensions</a>","description":"width, height, depth of box"},{"title":"CAP","link":"<a href=\"global.html#CAP\">CAP</a>","description":"Enum for cylinder cap styles."},{"title":"CDJSON","link":"<a href=\"global.html#CDJSON\">CDJSON</a>","description":"This parses the ChemDoodle json file format. Although this is registered \nfor the json file extension, other chemical json file formats exist that \nthis can not parse. Check which one you have and do not assume that \n.json can be parsed"},{"title":"CIF","link":"<a href=\"global.html#CIF\">CIF</a>","description":"Puts atoms specified in mmCIF fromat in str into atoms"},{"title":"CUBE","link":"<a href=\"global.html#CUBE\">CUBE</a>"},{"title":"CartoonStyleSpec","link":"<a href=\"CartoonStyleSpec.html\">CartoonStyleSpec</a>","description":"A visualization of protein or nucleic acid secondary structure. Applying this to other molecules will not show anything. \nIn nucleic acids, the base cylinders obtain their color from the atom to which the cylinder is drawn, which is 'N1' for purines (resn: 'A', 'G', 'DA', 'DG') and \n'N3' for pyrimidines (resn: 'C', 'U', 'DC', 'DT'). \nThe different nucleobases can therefore be distinguished as by setting the colors \nof each of these atoms. The backbone color is set from the 'P' atoms ('O5' for the 5' terminus)."},{"title":"CartoonStyleSpec#arrows","link":"<a href=\"CartoonStyleSpec.html#arrows\">arrows</a>","description":"whether to add arrows showing beta-sheet \ndirectionality; does not apply to trace or ribbon"},{"title":"CartoonStyleSpec#color","link":"<a href=\"CartoonStyleSpec.html#color\">color</a>","description":"strand color, may specify as 'spectrum' which will apply reversed gradient based on residue number"},{"title":"CartoonStyleSpec#colorfunc","link":"<a href=\"CartoonStyleSpec.html#colorfunc\">colorfunc</a>","description":"Allows the user to provide a function for setting the colorschemes."},{"title":"CartoonStyleSpec#colorscheme","link":"<a href=\"CartoonStyleSpec.html#colorscheme\">colorscheme</a>","description":"colorscheme to use on atoms; overrides color"},{"title":"CartoonStyleSpec#gapcutoff","link":"<a href=\"CartoonStyleSpec.html#gapcutoff\">gapcutoff</a>","description":"If there is a gap of strictly fewer than gapcutoff missing residues \nwithin a chain, draw a dashed line."},{"title":"CartoonStyleSpec#hidden","link":"<a href=\"CartoonStyleSpec.html#hidden\">hidden</a>","description":"do not show"},{"title":"CartoonStyleSpec#opacity","link":"<a href=\"CartoonStyleSpec.html#opacity\">opacity</a>","description":"set opacity from 0-1; transparency is set per-chain \nwith a warning outputted in the event of ambiguity"},{"title":"CartoonStyleSpec#ribbon","link":"<a href=\"CartoonStyleSpec.html#ribbon\">ribbon</a>","description":"whether to use constant strand width, disregarding \nsecondary structure; use thickness to adjust radius"},{"title":"CartoonStyleSpec#style","link":"<a href=\"CartoonStyleSpec.html#style\">style</a>","description":"style of cartoon rendering (trace, oval, rectangle (default), parabola, edged)"},{"title":"CartoonStyleSpec#thickness","link":"<a href=\"CartoonStyleSpec.html#thickness\">thickness</a>","description":"cartoon strand thickness, default is 0.4"},{"title":"CartoonStyleSpec#tubes","link":"<a href=\"CartoonStyleSpec.html#tubes\">tubes</a>","description":"whether to display alpha helices as simple cylinders; \ndoes not apply to trace"},{"title":"CartoonStyleSpec#width","link":"<a href=\"CartoonStyleSpec.html#width\">width</a>","description":"cartoon strand width, default is secondary \nstructure-dependent; does not apply to trace or ribbon"},{"title":"ClickSphereStyleSpec","link":"<a href=\"ClickSphereStyleSpec.html\">ClickSphereStyleSpec</a>","description":"Invisible click sphere style specification. This lets you set \nlarger (or smaller) click targets on atoms then the default radii or \nhave clickable atoms even if they aren't being rendered visibly."},{"title":"ClickSphereStyleSpec#hidden","link":"<a href=\"ClickSphereStyleSpec.html#hidden\">hidden</a>","description":"do not show sticks"},{"title":"ClickSphereStyleSpec#radius","link":"<a href=\"ClickSphereStyleSpec.html#radius\">radius</a>","description":"fixed radius of sphere"},{"title":"ClickSphereStyleSpec#scale","link":"<a href=\"ClickSphereStyleSpec.html#scale\">scale</a>","description":"scale VDW radius by specified amount"},{"title":"Color","link":"<a href=\"Color.html\">Color</a>"},{"title":"ColorSpec","link":"<a href=\"global.html#ColorSpec\">ColorSpec</a>","description":"Color representation. A hex number, html color name, or object with r/g/b properties"},{"title":"ColorschemeSpec","link":"<a href=\"global.html#ColorschemeSpec\">ColorschemeSpec</a>","description":"Colorscheme specification."},{"title":"ContextMenu#hide","link":"<a href=\"ContextMenu.html#hide\">hide</a>","description":"Hides the context menu and if needed process the propertyMenu"},{"title":"ContextMenu#show","link":"<a href=\"ContextMenu.html#show\">show</a>","description":"Shows the context menu"},{"title":"CrossStyleSpec","link":"<a href=\"CrossStyleSpec.html\">CrossStyleSpec</a>","description":"Cross style specification"},{"title":"CrossStyleSpec#color","link":"<a href=\"CrossStyleSpec.html#color\">color</a>","description":"fixed coloring"},{"title":"CrossStyleSpec#colorfunc","link":"<a href=\"CrossStyleSpec.html#colorfunc\">colorfunc</a>","description":"Allows the user to provide a function for setting the colorschemes."},{"title":"CrossStyleSpec#colorscheme","link":"<a href=\"CrossStyleSpec.html#colorscheme\">colorscheme</a>","description":"colorscheme to use on atoms; overrides color"},{"title":"CrossStyleSpec#hidden","link":"<a href=\"CrossStyleSpec.html#hidden\">hidden</a>","description":"do not show line"},{"title":"CrossStyleSpec#linewidth","link":"<a href=\"CrossStyleSpec.html#linewidth\">linewidth</a>","description":"deprecated due to vanishing browser support*"},{"title":"CrossStyleSpec#opacity","link":"<a href=\"CrossStyleSpec.html#opacity\">opacity</a>","description":"opacity (zero to one), must be the same for all atoms in a model"},{"title":"CrossStyleSpec#radius","link":"<a href=\"CrossStyleSpec.html#radius\">radius</a>","description":"radius of cross"},{"title":"CrossStyleSpec#scale","link":"<a href=\"CrossStyleSpec.html#scale\">scale</a>","description":"scale VDW radius by specified amount"},{"title":"CurveSpec","link":"<a href=\"CurveSpec.html\">CurveSpec</a>","description":"Curve shape specification."},{"title":"CurveSpec#fromArrow","link":"<a href=\"CurveSpec.html#fromArrow\">fromArrow</a>","description":"if an arrow should be drawn at the start"},{"title":"CurveSpec#fromCap","link":"<a href=\"CurveSpec.html#fromCap\">fromCap</a>","description":"have cap at start"},{"title":"CurveSpec#points","link":"<a href=\"CurveSpec.html#points\">points</a>","description":"Sequence of points to draw curve through"},{"title":"CurveSpec#radius","link":"<a href=\"CurveSpec.html#radius\">radius</a>","description":"radius of curve"},{"title":"CurveSpec#smooth","link":"<a href=\"CurveSpec.html#smooth\">smooth</a>","description":"amount of interpolation"},{"title":"CurveSpec#toArrow","link":"<a href=\"CurveSpec.html#toArrow\">toArrow</a>","description":"if an arrow should be drawn at the end"},{"title":"CurveSpec#toCap","link":"<a href=\"CurveSpec.html#toCap\">toCap</a>","description":"have cap at end"},{"title":"CustomLinear","link":"<a href=\"CustomLinear.html\">CustomLinear</a>"},{"title":"CustomShapeSpec","link":"<a href=\"CustomShapeSpec.html\">CustomShapeSpec</a>","description":"Specification for adding custom shape."},{"title":"CustomShapeSpec#faceArr","link":"<a href=\"CustomShapeSpec.html#faceArr\">faceArr</a>","description":"List of triangles to build the custom shape. Each triangle is defined by the indices of 3 vertices in vertexArr, so the array length should be 3 times the number of faces."},{"title":"CustomShapeSpec#normalArr","link":"<a href=\"CustomShapeSpec.html#normalArr\">normalArr</a>","description":"List of normal vectors for each vertex"},{"title":"CustomShapeSpec#vertexArr","link":"<a href=\"CustomShapeSpec.html#vertexArr\">vertexArr</a>","description":"List of vertex positions"},{"title":"Cylinder","link":"<a href=\"Cylinder.html\">Cylinder</a>"},{"title":"CylinderSpec","link":"<a href=\"CylinderSpec.html\">CylinderSpec</a>","description":"Cylinder shape specification."},{"title":"CylinderSpec#dashLength","link":"<a href=\"CylinderSpec.html#dashLength\">dashLength</a>","description":"Length of dashes (default 0.25)"},{"title":"CylinderSpec#dashed","link":"<a href=\"CylinderSpec.html#dashed\">dashed</a>","description":"Make the cylinder dashed."},{"title":"CylinderSpec#end","link":"<a href=\"CylinderSpec.html#end\">end</a>","description":"ending position"},{"title":"CylinderSpec#fromCap","link":"<a href=\"CylinderSpec.html#fromCap\">fromCap</a>","description":"Place a cap at the start (none, flat or round)"},{"title":"CylinderSpec#gapLength","link":"<a href=\"CylinderSpec.html#gapLength\">gapLength</a>","description":"Length of gaps (default 0.25)"},{"title":"CylinderSpec#hidden","link":"<a href=\"CylinderSpec.html#hidden\">hidden</a>","description":"hidden"},{"title":"CylinderSpec#radius","link":"<a href=\"CylinderSpec.html#radius\">radius</a>","description":"radius"},{"title":"CylinderSpec#start","link":"<a href=\"CylinderSpec.html#start\">start</a>","description":"starting vector"},{"title":"CylinderSpec#toCap","link":"<a href=\"CylinderSpec.html#toCap\">toCap</a>","description":"Place a cap at the end (none, flat or round)"},{"title":"DashedBondSpec","link":"<a href=\"DashedBondSpec.html\">DashedBondSpec</a>","description":"Dashed Bond style specification"},{"title":"DashedBondSpec#dashLength","link":"<a href=\"DashedBondSpec.html#dashLength\">dashLength</a>","description":"length of dash (default 0.1)"},{"title":"DashedBondSpec#gapLength","link":"<a href=\"DashedBondSpec.html#gapLength\">gapLength</a>","description":"length of gap (default 0.25)"},{"title":"FogSpec","link":"<a href=\"FogSpec.html\">FogSpec</a>","description":"Fog specification."},{"title":"FogSpec#fogEnd","link":"<a href=\"FogSpec.html#fogEnd\">fogEnd</a>","description":"Fraction with the slab where fog ends (nothing visible after this point). Default 1.0."},{"title":"FogSpec#fogStart","link":"<a href=\"FogSpec.html#fogStart\">fogStart</a>","description":"Fraction within the slab where fog starts to be linearly added. Default 0.4."},{"title":"GLDraw","link":"<a href=\"GLDraw.html\">GLDraw</a>","description":"Lower level utilities for creating WebGL shape geometries. \nThese are not intended for general consumption."},{"title":"GLDraw.drawCone","link":"<a href=\"GLDraw.html#.drawCone\">drawCone</a>","description":"Create a cone"},{"title":"GLDraw.drawCylinder","link":"<a href=\"GLDraw.html#.drawCylinder\">drawCylinder</a>","description":"Create a cylinder"},{"title":"GLDraw.drawSphere","link":"<a href=\"GLDraw.html#.drawSphere\">drawSphere</a>","description":"Create a sphere."},{"title":"GLModel","link":"<a href=\"GLModel.html\">GLModel</a>"},{"title":"GLModel#addAtomSpecs","link":"<a href=\"GLModel.html#addAtomSpecs\">addAtomSpecs</a>","description":"add atomSpecs to validAtomSelectionSpecs"},{"title":"GLModel#addAtomSpecs","link":"<a href=\"GLModel.html#addAtomSpecs\">addAtomSpecs</a>","description":"add atomSpecs to validAtomSelectionSpecs"},{"title":"GLModel#addAtoms","link":"<a href=\"GLModel.html#addAtoms\">addAtoms</a>","description":"Add list of new atoms to model. Adjusts bonds appropriately."},{"title":"GLModel#addAtoms","link":"<a href=\"GLModel.html#addAtoms\">addAtoms</a>","description":"Add list of new atoms to model. Adjusts bonds appropriately."},{"title":"GLModel#addFrame","link":"<a href=\"GLModel.html#addFrame\">addFrame</a>","description":"Add atoms as frames of model"},{"title":"GLModel#addFrame","link":"<a href=\"GLModel.html#addFrame\">addFrame</a>","description":"Add atoms as frames of model"},{"title":"GLModel#addMolData","link":"<a href=\"GLModel.html#addMolData\">addMolData</a>","description":"add atoms to this model from molecular data string"},{"title":"GLModel#addMolData","link":"<a href=\"GLModel.html#addMolData\">addMolData</a>","description":"add atoms to this model from molecular data string"},{"title":"GLModel#addPropertyLabels","link":"<a href=\"GLModel.html#addPropertyLabels\">addPropertyLabels</a>","description":"Create labels for atoms that show the value of the passed property."},{"title":"GLModel#addPropertyLabels","link":"<a href=\"GLModel.html#addPropertyLabels\">addPropertyLabels</a>","description":"Create labels for atoms that show the value of the passed property."},{"title":"GLModel#addResLabels","link":"<a href=\"GLModel.html#addResLabels\">addResLabels</a>","description":"Create labels for residues of selected atoms. \nWill create a single label at the center of mass of all atoms \nwith the same chain,resn, and resi."},{"title":"GLModel#addResLabels","link":"<a href=\"GLModel.html#addResLabels\">addResLabels</a>","description":"Create labels for residues of selected atoms. \nWill create a single label at the center of mass of all atoms \nwith the same chain,resn, and resi."},{"title":"GLModel#assignBonds","link":"<a href=\"GLModel.html#assignBonds\">assignBonds</a>","description":"Assign bonds based on atomic coordinates. \nThis currently uses a primitive distance-based algorithm that does not \nconsider valence constraints and will only create single bonds."},{"title":"GLModel#assignBonds","link":"<a href=\"GLModel.html#assignBonds\">assignBonds</a>","description":"Assign bonds based on atomic coordinates. \nThis currently uses a primitive distance-based algorithm that does not \nconsider valence constraints and will only create single bonds."},{"title":"GLModel#atomIsSelected","link":"<a href=\"GLModel.html#atomIsSelected\">atomIsSelected</a>","description":"given a selection specification, return true if atom is selected. \nDoes not support context-aware selectors like expand/within/byres."},{"title":"GLModel#atomIsSelected","link":"<a href=\"GLModel.html#atomIsSelected\">atomIsSelected</a>","description":"given a selection specification, return true if atom is selected. \nDoes not support context-aware selectors like expand/within/byres."},{"title":"GLModel#createMolObj","link":"<a href=\"GLModel.html#createMolObj\">createMolObj</a>","description":"param {AtomSpec[]} atoms"},{"title":"GLModel#drawAtomClickSphere","link":"<a href=\"GLModel.html#drawAtomClickSphere\">drawAtomClickSphere</a>","description":"Register atom shaped click handlers"},{"title":"GLModel#drawAtomCross","link":"<a href=\"GLModel.html#drawAtomCross\">drawAtomCross</a>"},{"title":"GLModel#drawAtomSphere","link":"<a href=\"GLModel.html#drawAtomSphere\">drawAtomSphere</a>"},{"title":"GLModel#drawBondLines","link":"<a href=\"GLModel.html#drawBondLines\">drawBondLines</a>"},{"title":"GLModel#enableContextMenu","link":"<a href=\"GLModel.html#enableContextMenu\">enableContextMenu</a>","description":"enable context menu of selected atoms"},{"title":"GLModel#enableContextMenu","link":"<a href=\"GLModel.html#enableContextMenu\">enableContextMenu</a>","description":"enable context menu of selected atoms"},{"title":"GLModel#expandAtomList","link":"<a href=\"GLModel.html#expandAtomList\">expandAtomList</a>","description":"returns a list of atoms in the expanded bounding box, but not in the current one\nBounding box:\n[ [ xmin, ymin, zmin ], \n[ xmax, ymax, zmax ], \n[ xctr, yctr, zctr ] ]"},{"title":"GLModel#exportVRML","link":"<a href=\"GLModel.html#exportVRML\">exportVRML</a>","description":"return a VRML string representation of the model. Does not include VRML header information"},{"title":"GLModel#exportVRML","link":"<a href=\"GLModel.html#exportVRML\">exportVRML</a>","description":"return a VRML string representation of the model. Does not include VRML header information"},{"title":"GLModel#getCrystData","link":"<a href=\"GLModel.html#getCrystData\">getCrystData</a>","description":"Returns crystallographic information if present."},{"title":"GLModel#getCrystData","link":"<a href=\"GLModel.html#getCrystData\">getCrystData</a>","description":"Returns crystallographic information if present."},{"title":"GLModel#getID","link":"<a href=\"GLModel.html#getID\">getID</a>","description":"Returns model id number"},{"title":"GLModel#getID","link":"<a href=\"GLModel.html#getID\">getID</a>","description":"Returns model id number"},{"title":"GLModel#getInternalState","link":"<a href=\"GLModel.html#getInternalState\">getInternalState</a>","description":"Return object representing internal state of \nthe model appropriate for passing to setInternalState"},{"title":"GLModel#getInternalState","link":"<a href=\"GLModel.html#getInternalState\">getInternalState</a>","description":"Return object representing internal state of \nthe model appropriate for passing to setInternalState"},{"title":"GLModel#getNumFrames","link":"<a href=\"GLModel.html#getNumFrames\">getNumFrames</a>","description":"Returns model's frames property, a list of atom lists"},{"title":"GLModel#getNumFrames","link":"<a href=\"GLModel.html#getNumFrames\">getNumFrames</a>","description":"Returns model's frames property, a list of atom lists"},{"title":"GLModel#getRadiusFromStyle","link":"<a href=\"GLModel.html#getRadiusFromStyle\">getRadiusFromStyle</a>"},{"title":"GLModel#getSymmetries","link":"<a href=\"GLModel.html#getSymmetries\">getSymmetries</a>","description":"Returns list of rotational/translational matrices if there is BIOMT data \nOtherwise returns a list of just the ID matrix"},{"title":"GLModel#getSymmetries","link":"<a href=\"GLModel.html#getSymmetries\">getSymmetries</a>","description":"Returns list of rotational/translational matrices if there is BIOMT data \nOtherwise returns a list of just the ID matrix"},{"title":"GLModel#getViewer","link":"<a href=\"GLModel.html#getViewer\">getViewer</a>","description":"Return viewer associated with this model."},{"title":"GLModel#getViewer","link":"<a href=\"GLModel.html#getViewer\">getViewer</a>","description":"Return viewer associated with this model."},{"title":"GLModel#globj","link":"<a href=\"GLModel.html#globj\">globj</a>","description":"manage the globj for this model in the possed modelGroup - if it has to be regenerated, remove and add"},{"title":"GLModel#globj","link":"<a href=\"GLModel.html#globj\">globj</a>","description":"manage the globj for this model in the possed modelGroup - if it has to be regenerated, remove and add"},{"title":"GLModel#hide","link":"<a href=\"GLModel.html#hide\">hide</a>","description":"Don't show this model in future renderings. Keep all styles and state \nso it can be efficiencly shown again.\n<ul>\n<li>@see GLModel#show</li>\n</ul>"},{"title":"GLModel#hide","link":"<a href=\"GLModel.html#hide\">hide</a>","description":"Don't show this model in future renderings. Keep all styles and state \nso it can be efficiencly shown again.\n<ul>\n<li>@see GLModel#show</li>\n</ul>"},{"title":"GLModel#removeAtoms","link":"<a href=\"GLModel.html#removeAtoms\">removeAtoms</a>","description":"Remove specified atoms from model"},{"title":"GLModel#removeAtoms","link":"<a href=\"GLModel.html#removeAtoms\">removeAtoms</a>","description":"Remove specified atoms from model"},{"title":"GLModel#removegl","link":"<a href=\"GLModel.html#removegl\">removegl</a>","description":"Remove any renderable mol object from scene"},{"title":"GLModel#removegl","link":"<a href=\"GLModel.html#removegl\">removegl</a>","description":"Remove any renderable mol object from scene"},{"title":"GLModel#selectedAtoms","link":"<a href=\"GLModel.html#selectedAtoms\">selectedAtoms</a>","description":"return list of atoms selected by sel, this is specific to glmodel"},{"title":"GLModel#selectedAtoms","link":"<a href=\"GLModel.html#selectedAtoms\">selectedAtoms</a>","description":"return list of atoms selected by sel, this is specific to glmodel"},{"title":"GLModel#setClickable","link":"<a href=\"GLModel.html#setClickable\">setClickable</a>","description":"Set clickable and callback of selected atoms"},{"title":"GLModel#setClickable","link":"<a href=\"GLModel.html#setClickable\">setClickable</a>","description":"Set clickable and callback of selected atoms"},{"title":"GLModel#setColorByElement","link":"<a href=\"GLModel.html#setColorByElement\">setColorByElement</a>","description":"given a mapping from element to color, set atom colors"},{"title":"GLModel#setColorByElement","link":"<a href=\"GLModel.html#setColorByElement\">setColorByElement</a>","description":"given a mapping from element to color, set atom colors"},{"title":"GLModel#setColorByFunction","link":"<a href=\"GLModel.html#setColorByFunction\">setColorByFunction</a>"},{"title":"GLModel#setColorByFunction","link":"<a href=\"GLModel.html#setColorByFunction\">setColorByFunction</a>"},{"title":"GLModel#setColorByProperty","link":"<a href=\"GLModel.html#setColorByProperty\">setColorByProperty</a>"},{"title":"GLModel#setColorByProperty","link":"<a href=\"GLModel.html#setColorByProperty\">setColorByProperty</a>"},{"title":"GLModel#setCoordinates","link":"<a href=\"GLModel.html#setCoordinates\">setCoordinates</a>","description":"Set coordinates for the atoms from provided trajectory file."},{"title":"GLModel#setCoordinates","link":"<a href=\"GLModel.html#setCoordinates\">setCoordinates</a>","description":"Set coordinates for the atoms from provided trajectory file."},{"title":"GLModel#setCoordinatesFromURL","link":"<a href=\"GLModel.html#setCoordinatesFromURL\">setCoordinatesFromURL</a>","description":"Set coordinates from remote trajectory file."},{"title":"GLModel#setCoordinatesFromURL","link":"<a href=\"GLModel.html#setCoordinatesFromURL\">setCoordinatesFromURL</a>","description":"Set coordinates from remote trajectory file."},{"title":"GLModel#setCrystData","link":"<a href=\"GLModel.html#setCrystData\">setCrystData</a>","description":"Set crystallographic information using three angles and three lengths"},{"title":"GLModel#setCrystData","link":"<a href=\"GLModel.html#setCrystData\">setCrystData</a>","description":"Set crystallographic information using three angles and three lengths"},{"title":"GLModel#setCrystMatrix","link":"<a href=\"GLModel.html#setCrystMatrix\">setCrystMatrix</a>","description":"Set the crystallographic matrix to the given matrix.\nThis function removes <code>a</code>, <code>b</code>, <code>c</code>, <code>alpha</code>, <code>beta</code>, <code>gamma</code> from \nthe crystal data."},{"title":"GLModel#setCrystMatrix","link":"<a href=\"GLModel.html#setCrystMatrix\">setCrystMatrix</a>","description":"Set the crystallographic matrix to the given matrix.\nThis function removes <code>a</code>, <code>b</code>, <code>c</code>, <code>alpha</code>, <code>beta</code>, <code>gamma</code> from \nthe crystal data."},{"title":"GLModel#setFrame","link":"<a href=\"GLModel.html#setFrame\">setFrame</a>","description":"Sets model's atomlist to specified frame \nSets to last frame if framenum out of range"},{"title":"GLModel#setFrame","link":"<a href=\"GLModel.html#setFrame\">setFrame</a>","description":"Sets model's atomlist to specified frame \nSets to last frame if framenum out of range"},{"title":"GLModel#setHoverable","link":"<a href=\"GLModel.html#setHoverable\">setHoverable</a>","description":"Set hoverable and callback of selected atoms"},{"title":"GLModel#setHoverable","link":"<a href=\"GLModel.html#setHoverable\">setHoverable</a>","description":"Set hoverable and callback of selected atoms"},{"title":"GLModel#setInternalState","link":"<a href=\"GLModel.html#setInternalState\">setInternalState</a>","description":"Overwrite the internal model state with the passed state."},{"title":"GLModel#setInternalState","link":"<a href=\"GLModel.html#setInternalState\">setInternalState</a>","description":"Overwrite the internal model state with the passed state."},{"title":"GLModel#setStyle","link":"<a href=\"GLModel.html#setStyle\">setStyle</a>","description":"Set atom style of selected atoms"},{"title":"GLModel#setStyle","link":"<a href=\"GLModel.html#setStyle\">setStyle</a>","description":"Set atom style of selected atoms"},{"title":"GLModel#setSymmetries","link":"<a href=\"GLModel.html#setSymmetries\">setSymmetries</a>","description":"Sets symmetries based on specified matrices in list"},{"title":"GLModel#setSymmetries","link":"<a href=\"GLModel.html#setSymmetries\">setSymmetries</a>","description":"Sets symmetries based on specified matrices in list"},{"title":"GLModel#show","link":"<a href=\"GLModel.html#show\">show</a>","description":"Unhide a hidden model"},{"title":"GLModel#show","link":"<a href=\"GLModel.html#show\">show</a>","description":"Unhide a hidden model"},{"title":"GLModel#toCDObject","link":"<a href=\"GLModel.html#toCDObject\">toCDObject</a>","description":"Convert the model into an object in the format of a ChemDoodle JSON model."},{"title":"GLModel#toCDObject","link":"<a href=\"GLModel.html#toCDObject\">toCDObject</a>","description":"Convert the model into an object in the format of a ChemDoodle JSON model."},{"title":"GLModel#vibrate","link":"<a href=\"GLModel.html#vibrate\">vibrate</a>","description":"If model atoms have dx, dy, dz properties (in some xyz files), vibrate populates the model's frame property based on parameters. \nModel can then be animated"},{"title":"GLModel#vibrate","link":"<a href=\"GLModel.html#vibrate\">vibrate</a>","description":"If model atoms have dx, dy, dz properties (in some xyz files), vibrate populates the model's frame property based on parameters. \nModel can then be animated"},{"title":"GLShape","link":"<a href=\"GLShape.html\">GLShape</a>","description":"Custom renderable shape"},{"title":"GLShape#GLShape","link":"<a href=\"GLShape_GLShape.html\">GLShape</a>","description":"Custom renderable shape"},{"title":"GLShape#addArrow","link":"<a href=\"GLShape.html#addArrow\">addArrow</a>","description":"Creates an arrow shape"},{"title":"GLShape#addArrow","link":"<a href=\"GLShape.html#addArrow\">addArrow</a>","description":"Creates an arrow shape"},{"title":"GLShape#addBox","link":"<a href=\"GLShape.html#addBox\">addBox</a>","description":"Creates a box"},{"title":"GLShape#addBox","link":"<a href=\"GLShape.html#addBox\">addBox</a>","description":"Creates a box"},{"title":"GLShape#addCurve","link":"<a href=\"GLShape.html#addCurve\">addCurve</a>","description":"Creates a curved shape"},{"title":"GLShape#addCurve","link":"<a href=\"GLShape.html#addCurve\">addCurve</a>","description":"Creates a curved shape"},{"title":"GLShape#addCustom","link":"<a href=\"GLShape.html#addCustom\">addCustom</a>","description":"Creates a custom shape from supplied vertex and face arrays"},{"title":"GLShape#addCustom","link":"<a href=\"GLShape.html#addCustom\">addCustom</a>","description":"Creates a custom shape from supplied vertex and face arrays"},{"title":"GLShape#addCylinder","link":"<a href=\"GLShape.html#addCylinder\">addCylinder</a>","description":"Creates a cylinder shape"},{"title":"GLShape#addCylinder","link":"<a href=\"GLShape.html#addCylinder\">addCylinder</a>","description":"Creates a cylinder shape"},{"title":"GLShape#addDashedCylinder","link":"<a href=\"GLShape.html#addDashedCylinder\">addDashedCylinder</a>","description":"Creates a dashed cylinder shape"},{"title":"GLShape#addDashedCylinder","link":"<a href=\"GLShape.html#addDashedCylinder\">addDashedCylinder</a>","description":"Creates a dashed cylinder shape"},{"title":"GLShape#addIsosurface","link":"<a href=\"GLShape.html#addIsosurface\">addIsosurface</a>","description":"Create isosurface from volumetric data."},{"title":"GLShape#addIsosurface","link":"<a href=\"GLShape.html#addIsosurface\">addIsosurface</a>","description":"Create isosurface from volumetric data."},{"title":"GLShape#addLine","link":"<a href=\"GLShape.html#addLine\">addLine</a>","description":"Creates a line shape"},{"title":"GLShape#addLine","link":"<a href=\"GLShape.html#addLine\">addLine</a>","description":"Creates a line shape"},{"title":"GLShape#addSphere","link":"<a href=\"GLShape.html#addSphere\">addSphere</a>","description":"Creates a sphere shape"},{"title":"GLShape#addSphere","link":"<a href=\"GLShape.html#addSphere\">addSphere</a>","description":"Creates a sphere shape"},{"title":"GLShape#addVolumetricData","link":"<a href=\"GLShape.html#addVolumetricData\">addVolumetricData</a>"},{"title":"GLShape#addVolumetricData","link":"<a href=\"GLShape.html#addVolumetricData\">addVolumetricData</a>"},{"title":"GLShape#intersectionShape","link":"<a href=\"GLShape.html#intersectionShape\">intersectionShape</a>"},{"title":"GLShape#updateStyle","link":"<a href=\"GLS