3dmol

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JavaScript/TypeScript molecular visualization library

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target="_blank">GitHub</a></div></div><div class="navbar-right-items"><div class="navbar-right-item"><button class="icon-button search-button" aria-label="open-search"><svg><use xlink:href="#search-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button theme-toggle" aria-label="toggle-theme"><svg><use class="theme-svg-use" xlink:href="#dark-theme-icon"></use></svg></button></div><div class="navbar-right-item"><button class="icon-button font-size" aria-label="change-font-size"><svg><use xlink:href="#font-size-icon"></use></svg></button></div></div><nav></nav></nav></div><div class="toc-container"><div class="toc-content"><span class="bold">On this page</span><div id="eed4d2a0bfd64539bb9df78095dec881"></div></div></div><div class="body-wrapper"><div class="main-content"><div class="main-wrapper"><section><header><h1 id="StateManager-title" class="has-anchor">StateManager</h1></header><article><div class="container-overview"><h3 class="name has-anchor" id="StateManager"><span class="type-signature"></span>new StateManager<span class="signature">(glviewer, config)</span></h3><div class="description"><p>$3Dmol.StateManager - StateManager creates the space to preserve the state of the ui and sync it with the GLViewer</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>glviewer</code></td><td class="type"><span class="param-type">$3Dmol.<wbr>GLViewer</span></td><td class="description last"><p>StateManager is required to have interaction between glviewer and the ui.</p></td></tr><tr><td class="name"><code>config</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Loads the user defined parameters to generate the ui and handle state</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl></div><h2 id="methods" class="subsection-title has-anchor">Methods</h2><h3 class="name has-anchor" id="addAtomLabel"><span class="type-signature"></span>addAtomLabel<span class="signature">(labelValue, atom)</span></h3><div class="description"><p>Adds atom label to the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>labelValue</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Output object from propertyMenu form of Context Menu</p></td></tr><tr><td class="name"><code>atom</code></td><td class="type"><span class="param-type"><a href="AtomSpec.html">AtomSpec</a></span></td><td class="description last"><p>Atom spec that are to be added in the label</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="addLabel"><span class="type-signature"></span>addLabel<span class="signature">(labelValue)</span></h3><div class="description"><p>Adds Label to the viewport specific to the selection</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>labelValue</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Output object from label form of Context Menu</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="addModel"><span class="type-signature"></span>addModel<span class="signature">(modelDesc)</span></h3><div class="description"><p>Add model to the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>modelDesc</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Model Toolbar output</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="addSelection"><span class="type-signature"></span>addSelection<span class="signature">(spec, sid)</span></h3><div class="description"><p>Add Selection from the ui to glviewer</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>spec</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Object that contains the output from the form</p></td></tr><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>If surface id being edited then sid is set to some string</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><div class="method-member-container mt-20"><strong>Returns:</strong><div class="param-desc"><p>String</p></div></div><h3 class="name has-anchor" id="addStyle"><span class="type-signature"></span>addStyle<span class="signature">(spec, sid, stid)</span></h3><div class="description"><p>Add style and renders it into the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>spec</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Output object of style form</p></td></tr><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Selection Id</p></td></tr><tr><td class="name"><code>stid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Style Id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><div class="method-member-container mt-20"><strong>Returns:</strong><div class="param-desc"><p>String</p></div></div><h3 class="name has-anchor" id="addSurface"><span class="type-signature"></span>addSurface<span class="signature">(property, callback)</span></h3><div class="description"><p>Adds surface to the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>property</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Surface output object</p></td></tr><tr><td class="name"><code>callback</code></td><td class="type"><span class="param-type">function</span></td><td class="description last"><p>callback</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><div class="method-member-container mt-20"><strong>Returns:</strong><div class="param-desc"><p>String</p></div></div><h3 class="name has-anchor" id="checkAtoms"><span class="type-signature"></span>checkAtoms<span class="signature">(sel)</span></h3><div class="description"><p>Return true if the selections contain at least one atom</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>sel</code></td><td class="type"><span class="param-type"><a href="AtomSelectionSpec.html">AtomSelectionSpec</a></span></td><td class="description last"><p>Atom selection spec</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><div class="method-member-container mt-20"><strong>Returns:</strong><div class="param-desc"><p>Boolean</p></div></div><h3 class="name has-anchor" id="createSelectionAndStyle"><span class="type-signature"></span>createSelectionAndStyle<span class="signature">(selSpec, styleSpec)</span></h3><div class="description"><p>Updates the state variable for selections and styles and trigger ui to show the<br>ui elements for these selections and styles.</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>selSpec</code></td><td class="type"><span class="param-type"><a href="AtomSelectionSpec.html">AtomSelectionSpec</a></span></td><td class="description last"><p>Atom Selection Spec</p></td></tr><tr><td class="name"><code>styleSpec</code></td><td class="type"><span class="param-type"><a href="AtomStyleSpec.html">AtomStyleSpec</a></span></td><td class="description last"><p>Atom Style Spec</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="createSurface"><span class="type-signature"></span>createSurface<span class="signature">(surfaceType, sel, style, sid)</span></h3><div class="description"><p>Creates selection and add surface with reference to that selection<br>and triggers updates in the ui</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>surfaceType</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Type of surface to be created</p></td></tr><tr><td class="name"><code>sel</code></td><td class="type"><span class="param-type"><a href="AtomSelectionSpec.html">AtomSelectionSpec</a></span></td><td class="description last"><p>Atom selection spec</p></td></tr><tr><td class="name"><code>style</code></td><td class="type"><span class="param-type"><a href="AtomStyleSpec.html">AtomStyleSpec</a></span></td><td class="description last"><p>Atom style spec</p></td></tr><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>selection id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="editSurface"><span class="type-signature"></span>editSurface<span class="signature">(surfaceProperty)</span></h3><div class="description"><p>Edit the exisiting surface in the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>surfaceProperty</code></td><td class="type"><span class="param-type">Object</span></td><td class="description last"><p>Surface Style</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="exitContextMenu"><span class="type-signature"></span>exitContextMenu<span class="signature">(processContextMenu)</span></h3><div class="description"><p>Executes hide context menu and process the label if needed</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>processContextMenu</code></td><td class="type"><span class="param-type">Boolean</span></td><td class="description last"><p>Specify the need to process the values in the context menu</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="getSelectionList"><span class="type-signature"></span>getSelectionList<span class="signature">()</span></h3><div class="description"><p>Returns the list of ids of selections that are created so far</p></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><div class="method-member-container mt-20"><strong>Returns:</strong><div class="param-desc"><array of selection ids></array></div></div><h3 class="name has-anchor" id="openContextMenu"><span class="type-signature"></span>openContextMenu<span class="signature">(atom, x, y)</span></h3><div class="description"><p>Opens context menu when called from glviewer</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>atom</code></td><td class="type"><span class="param-type"><a href="AtomSpec.html">AtomSpec</a></span></td><td class="description last"><p>Atom spec obtained from context menu event</p></td></tr><tr><td class="name"><code>x</code></td><td class="type"><span class="param-type">Number</span></td><td class="description last"><p>x coordinate of mouse on viewport</p></td></tr><tr><td class="name"><code>y</code></td><td class="type"><span class="param-type">Number</span></td><td class="description last"><p>y coordinate of mouse on the viewport</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="removeAtomLabel"><span class="type-signature"></span>removeAtomLabel<span class="signature">(atom)</span></h3><div class="description"><p>Removes the atom label from the viewpoer</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>atom</code></td><td class="type"><span class="param-type"><a href="AtomSpec.html">AtomSpec</a></span></td><td class="description last"><p>Atom spec</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="removeStyle"><span class="type-signature"></span>removeStyle<span class="signature">(sid, stid)</span></h3><div class="description"><p>Removes the style specified by stid</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Selection id</p></td></tr><tr><td class="name"><code>stid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Style Id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="removeSurface"><span class="type-signature"></span>removeSurface<span class="signature">(id)</span></h3><div class="description"><p>Removes surface from the viewport</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>id</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Surface Id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="setModelTitle"><span class="type-signature"></span>setModelTitle<span class="signature">(title)</span></h3><div class="description"><p>Sets the value of title in ModelToolBar</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>title</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Model title</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="toggleHide"><span class="type-signature"></span>toggleHide<span class="signature">(sid)</span></h3><div class="description"><p>Toggle the hidden property of the selection</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Selection id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="toggleHideStyle"><span class="type-signature"></span>toggleHideStyle<span class="signature">(sid, stid)</span></h3><div class="description"><p>Toggle hidden property of a style</p></div><div class="method-member-container flex flex-col w-100 overflow-auto mt-20"><strong>Parameters:</strong><table class="params"><thead><tr><th>Name</th><th>Type</th><th class="last">Description</th></tr></thead><tbody><tr><td class="name"><code>sid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Selection Id</p></td></tr><tr><td class="name"><code>stid</code></td><td class="type"><span class="param-type">String</span></td><td class="description last"><p>Style Id</p></td></tr></tbody></table></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl><h3 class="name has-anchor" id="updateUI"><span class="type-signature"></span>updateUI<span class="signature">()</span></h3><div class="description"><p>Updates the UI on viewport change</p></div><dl class="details"><div class="details-item-container"><dt class="tag-source bold">Source</dt><dd class="tag-source"><ul><li><a href="ui_state.js.html">ui/state.js</a></li></ul></dd></div></dl></article></section><footer class="footer" id="PeOAagUepe"><div class="wrapper">3Dmol.js © 2019-2024 | <a href="https://pitt.edu/" target="_blank">University of Pittsburgh</a> | <a href="https://github.com/3dmol/3Dmol.js/blob/master/LICENSE" 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