3dmol
Version:
JavaScript/TypeScript molecular visualization library
115 lines (114 loc) • 2.99 kB
TypeScript
/**
* Surface types
* @readonly
* @enum {number}
* @property VDW - van der Waals surface
* @property MS - Molecular surface
* @property SAS - Solvent accessible surface
* @property SES - Solvent exposed surface
*/
export declare enum SurfaceType {
VDW = 1,
MS = 2,
SAS = 3,
SES = 4
}
/**
* Render surface synchronously if true
* @param {boolean} [$3Dmol.syncSurface=false]
* @type {boolean} */
export declare var syncSurface: boolean;
/**
*
* @param {boolean} val - Whether surfaces should be rendered synchronously or in parallel.
*/
export declare function setSyncSurface(val: boolean): void;
export declare class MarchingCubeInitializer {
ISDONE: number;
constructor();
march(data: any, verts: any, faces: any, spec: any): void;
laplacianSmooth(numiter: any, verts: any, faces: any): void;
edgeTable: Uint32Array;
triTable: number[][];
edgeTable2: number[];
triTable2: number[][];
}
export declare let MarchingCube: MarchingCubeInitializer;
export declare class PointGrid {
data: Int32Array;
width: number;
height: number;
constructor(length: any, width: any, height: any);
set(x: number, y: number, z: number, pt: any): void;
get(x: number, y: number, z: number): {
ix: number;
iy: number;
iz: number;
};
}
export declare class ProteinSurface {
readonly INOUT = 1;
readonly ISDONE = 2;
readonly ISBOUND = 4;
ptranx: number;
ptrany: number;
ptranz: number;
probeRadius: number;
defaultScaleFactor: number;
scaleFactor: number;
pHeight: number;
pWidth: number;
pLength: number;
cutRadius: number;
vpBits: any;
vpDistance: any;
vpAtomID: any;
pminx: number;
pminy: number;
pminz: number;
pmaxx: number;
pmaxy: number;
pmaxz: number;
depty: {};
widxz: {};
faces: number[];
verts: any[];
static MarchingCube: MarchingCubeInitializer;
constructor();
readonly vdwRadii: {
H: number;
Li: number;
Na: number;
K: number;
C: number;
N: number;
O: number;
F: number;
P: number;
S: number;
CL: number;
BR: number;
SE: number;
ZN: number;
CU: number;
NI: number;
X: number;
};
private getVDWIndex;
readonly nb: Int32Array<ArrayBuffer>[];
getFacesAndVertices(atomlist: any[]): {
vertices: any[];
faces: any[];
};
initparm(extent: number[][], btype: any, volume: any): void;
boundingatom(btype: any): void;
fillvoxels(atoms: any, atomlist: any): void;
fillAtom(atom: any, atoms: any): void;
fillvoxelswaals(atoms: any, atomlist: any): void;
fillAtomWaals(atom: any, atoms: any): void;
buildboundary(): void;
fastdistancemap(): void;
fastoneshell(inarray: any, boundPoint: any): any[];
marchingcubeinit(stype: any): void;
marchingcube(stype: number): void;
}